Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LO009_RS01840 Genome accession   NZ_CP087298
Coordinates   386786..387646 (-) Length   286 a.a.
NCBI ID   WP_001152271.1    Uniprot ID   A0A9P2QF39
Organism   Acinetobacter baumannii strain OC070     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 381786..392646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO009_RS01815 - 382677..383987 (+) 1311 WP_000753285.1 tetratricopeptide repeat protein -
  LO009_RS01820 - 384064..384390 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  LO009_RS01825 rlmB 384492..385241 (+) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LO009_RS01830 - 385277..386191 (+) 915 WP_000075012.1 DMT family transporter -
  LO009_RS01835 coaE 386188..386784 (-) 597 WP_000874125.1 dephospho-CoA kinase -
  LO009_RS01840 pilD 386786..387646 (-) 861 WP_001152271.1 A24 family peptidase Machinery gene
  LO009_RS01845 pilC 387646..388872 (-) 1227 WP_000279215.1 type II secretion system F family protein Machinery gene
  LO009_RS01850 pilB 388902..390614 (-) 1713 WP_001274993.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LO009_RS01855 tpiA 390905..391699 (+) 795 WP_000016933.1 triose-phosphate isomerase -
  LO009_RS01860 secG 391712..392041 (+) 330 WP_000555570.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32098.49 Da        Isoelectric Point: 7.1041

>NTDB_id=628398 LO009_RS01840 WP_001152271.1 386786..387646(-) (pilD) [Acinetobacter baumannii strain OC070]
MQDIIAYFIQNLTALYIAVALMSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISTRYPAVELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLTLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=628398 LO009_RS01840 WP_001152271.1 386786..387646(-) (pilD) [Acinetobacter baumannii strain OC070]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCATGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TACTCGCTATCCAGCCGTCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTAACTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

97.552

100

0.976
  pilD Acinetobacter nosocomialis M2

97.203

100

0.972
  pilD Vibrio cholerae strain A1552

53.309

95.105

0.507
  pilD Vibrio campbellii strain DS40M4

52.03

94.755

0.493
  pilD Neisseria gonorrhoeae MS11

46.591

92.308

0.43