Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LO740_RS07985 Genome accession   NZ_CP087294
Coordinates   1663572..1664201 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain APEC E956     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1658572..1669201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO740_RS07965 (LO740_07960) ycbZ 1658973..1660733 (-) 1761 WP_000156476.1 Lon protease family protein -
  LO740_RS07970 (LO740_07965) matP 1660919..1661371 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LO740_RS07975 (LO740_07970) ompA 1661447..1662487 (-) 1041 WP_001314606.1 porin OmpA -
  LO740_RS07980 (LO740_07975) sulA 1662844..1663353 (-) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  LO740_RS07985 (LO740_07980) sxy/tfoX 1663572..1664201 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LO740_RS07990 (LO740_07985) yccS 1664164..1666326 (-) 2163 WP_000875041.1 YccS family putative transporter -
  LO740_RS07995 (LO740_07990) yccF 1666336..1666782 (-) 447 WP_001261236.1 YccF domain-containing protein -
  LO740_RS08000 (LO740_07995) helD 1666905..1668959 (+) 2055 WP_001317751.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=628372 LO740_RS07985 WP_000839153.1 1663572..1664201(+) (sxy/tfoX) [Escherichia coli strain APEC E956]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=628372 LO740_RS07985 WP_000839153.1 1663572..1664201(+) (sxy/tfoX) [Escherichia coli strain APEC E956]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1