Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LOY70_RS21540 Genome accession   NZ_CP087204
Coordinates   4988657..4990903 (-) Length   748 a.a.
NCBI ID   WP_265029264.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-054     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4983657..4995903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY70_RS21505 (LOY70_21460) murB 4984040..4985059 (-) 1020 WP_265029259.1 UDP-N-acetylmuramate dehydrogenase -
  LOY70_RS21510 (LOY70_21465) - 4985056..4985520 (-) 465 WP_265029260.1 low molecular weight protein-tyrosine-phosphatase -
  LOY70_RS21515 (LOY70_21470) kdsB 4985520..4986284 (-) 765 WP_265029261.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY70_RS21520 (LOY70_21475) - 4986281..4986466 (-) 186 WP_265029262.1 Trm112 family protein -
  LOY70_RS21525 (LOY70_21480) lpxK 4986490..4987500 (-) 1011 WP_265029263.1 tetraacyldisaccharide 4'-kinase -
  LOY70_RS21530 (LOY70_21485) - 4987500..4987928 (-) 429 WP_013694002.1 ExbD/TolR family protein -
  LOY70_RS21535 (LOY70_21490) exbB 4987925..4988560 (-) 636 WP_170842311.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY70_RS21540 (LOY70_21495) comA 4988657..4990903 (-) 2247 WP_265029264.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY70_RS21545 (LOY70_21500) - 4991049..4991564 (+) 516 WP_025214877.1 DUF2062 domain-containing protein -
  LOY70_RS21550 (LOY70_21505) - 4992310..4993611 (-) 1302 WP_265037986.1 IS4 family transposase -
  LOY70_RS21555 (LOY70_21510) - 4993851..4994882 (+) 1032 WP_265038044.1 IS110 family transposase -

Sequence

Protein


Download         Length: 748 a.a.        Molecular weight: 81355.23 Da        Isoelectric Point: 10.0391

>NTDB_id=628094 LOY70_RS21540 WP_265029264.1 4988657..4990903(-) (comA) [Pseudomonas sp. B21-054]
MRTGFVALALGLLAPVFLPALPPLWLIAAMPVFALMVLPFRTYPLGFFLFGLAWACLSAQFALDDRLPATLDGETRWVEG
RVVGLPQYSDGVVRFELADAQSRRTRLPTSMRLAWFGGPPVSSGERWRLAVKLKRPAGLLNPHGFDYEAWLLSRGIGATG
TVKDGRRLLPAQGAWRDGVRQALAQVDAQGRSGALAALVLGDGSGLSRDDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGVWPARLPWLPWACALAFSAALGYGLLAGFEVPVRRACTMIGLVLLWRWRFKHPDPWWAWLLAFNGVLLFDPL
ASLRPGFWLSFAAVAILMFTFGGRLGPWRWWQTWTRAQWLVAVGLCPLLLILGLPVSLSGPLVNLLAVPWISLLVLPSAL
LGTALLPVPFIGEGLLWMAGGLLDLLFEGLAWVAGRMPAWMPASVPLWAWGIAALGAFLLLLPKGLPLRVLGWPMLLLMV
FPPRESVPPGHAEIWHLDVGQGLAVLVRTRRHTLLYDAGPRFGEADAGERVVLPTLRKLGVQALDLMLLSHADADHAGGA
RAVRNGLSTTRVISGDPAALPDELQAGACDSGERWEWDGVRFELWQWSAALESNQKSCVLLVEAGGERLLLTGDIDTHAE
RALLDGPLAVPIQWLAAAHHGSRSSSSMALLSRLKPHSVLISRGQGNAFGHPHPRVVARYRRLGMAIYDSAEQGAIRLQL
GAHEPPFTEAGQRRYWRSPPSAGLKAGH

Nucleotide


Download         Length: 2247 bp        

>NTDB_id=628094 LOY70_RS21540 WP_265029264.1 4988657..4990903(-) (comA) [Pseudomonas sp. B21-054]
ATGCGCACAGGATTCGTCGCGCTTGCACTGGGGCTGTTGGCCCCGGTTTTTTTACCGGCACTGCCGCCGTTGTGGCTGAT
TGCAGCCATGCCGGTGTTCGCGCTGATGGTTTTGCCGTTTCGAACCTATCCGCTGGGTTTTTTCCTGTTCGGATTGGCTT
GGGCTTGTCTGTCGGCGCAGTTTGCGCTGGACGACCGATTACCCGCCACGCTGGACGGAGAAACCCGCTGGGTCGAAGGC
CGCGTCGTCGGCTTGCCGCAGTACAGCGACGGCGTGGTGCGTTTCGAACTGGCCGATGCCCAGTCACGGCGTACCCGGCT
GCCAACCTCGATGCGCCTGGCCTGGTTTGGCGGTCCGCCCGTCAGCAGCGGCGAGCGATGGCGATTGGCAGTGAAACTCA
AACGGCCCGCCGGGCTGCTGAACCCACACGGTTTTGACTATGAAGCCTGGCTGTTGAGTCGAGGCATCGGGGCGACTGGC
ACGGTCAAGGACGGCCGTCGCCTCCTGCCCGCCCAGGGCGCGTGGCGCGACGGCGTGCGACAGGCGCTGGCCCAGGTCGA
TGCCCAGGGGCGTTCCGGTGCGTTGGCGGCTTTGGTACTTGGCGACGGCAGTGGGTTGAGCCGCGATGACTGGCAAGTGC
TGCAAGACACGGGAACCGTCCATTTGCTGGTGATTTCCGGGCAGCACATCGGCCTGCTCGCCGGGCTGGTGTACCTGCTT
GTGGCCGGTGCAGCACGCTATGGCGTGTGGCCGGCGCGTCTGCCGTGGTTGCCCTGGGCCTGCGCGCTGGCCTTCAGCGC
GGCCCTGGGCTACGGCTTGCTGGCCGGCTTCGAGGTGCCGGTGCGGCGGGCCTGCACGATGATCGGCCTGGTGCTGCTGT
GGCGCTGGCGCTTCAAACATCCGGACCCTTGGTGGGCCTGGCTGCTGGCCTTTAATGGCGTGCTGCTGTTCGATCCGCTG
GCCAGCCTGAGACCAGGATTCTGGCTGTCGTTTGCGGCGGTGGCGATACTGATGTTCACCTTTGGCGGTCGCCTGGGTCC
CTGGCGCTGGTGGCAGACCTGGACCCGTGCCCAATGGCTGGTTGCGGTCGGCCTGTGTCCGTTGCTATTGATATTGGGCT
TGCCGGTCAGCCTCAGCGGCCCCCTGGTGAACTTGCTGGCAGTGCCTTGGATCAGCCTGTTGGTGTTGCCATCGGCGCTG
CTCGGCACGGCGTTGTTGCCGGTGCCATTCATTGGTGAGGGGCTGCTGTGGATGGCGGGCGGCTTGCTCGATTTGTTGTT
CGAAGGGCTGGCATGGGTTGCCGGGCGAATGCCGGCGTGGATGCCTGCTTCGGTCCCGCTCTGGGCCTGGGGCATCGCCG
CCCTCGGTGCTTTTTTACTGCTGTTGCCCAAGGGCCTGCCGCTGCGGGTGCTGGGGTGGCCGATGCTGCTGTTGATGGTT
TTCCCGCCGCGAGAAAGCGTGCCGCCAGGCCATGCCGAAATCTGGCACCTGGACGTAGGCCAAGGGCTTGCGGTGCTCGT
GCGTACCCGTCGCCATACTCTGCTCTACGATGCCGGGCCGCGCTTTGGTGAGGCTGACGCGGGCGAGCGTGTCGTGCTGC
CCACCTTGCGCAAGCTGGGGGTGCAGGCCCTGGATTTGATGCTGCTCAGCCATGCCGATGCCGACCACGCTGGCGGTGCC
CGCGCCGTGCGTAACGGCCTGTCAACGACGCGCGTGATCAGCGGAGATCCTGCCGCGCTGCCTGATGAACTGCAGGCGGG
AGCCTGCGACAGCGGCGAGCGATGGGAGTGGGACGGGGTCAGGTTCGAACTCTGGCAATGGTCCGCAGCCCTGGAAAGCA
ACCAGAAGTCCTGCGTCTTGCTGGTGGAGGCCGGCGGTGAACGCCTGCTGCTGACTGGCGATATCGATACCCATGCTGAA
CGCGCCTTGCTCGATGGGCCCCTGGCGGTACCGATCCAATGGTTGGCCGCTGCGCATCATGGCAGCCGCAGCTCCTCGTC
GATGGCGCTGTTGTCGCGCTTGAAACCTCATTCGGTGTTGATTTCCCGGGGACAAGGCAACGCGTTTGGTCATCCGCATC
CCCGGGTGGTCGCTCGCTACCGACGGCTGGGGATGGCGATTTACGACAGCGCCGAACAGGGCGCCATTCGTCTGCAACTG
GGCGCCCATGAACCTCCTTTCACCGAGGCCGGGCAACGACGCTATTGGCGCAGTCCGCCGTCTGCGGGGCTAAAGGCCGG
ACATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-675)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.034

95.722

0.584