Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY70_RS21535 Genome accession   NZ_CP087204
Coordinates   4987925..4988560 (-) Length   211 a.a.
NCBI ID   WP_170842311.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-054     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4982925..4993560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY70_RS21500 (LOY70_21455) - 4983302..4983772 (-) 471 WP_025214869.1 (2Fe-2S)-binding protein -
  LOY70_RS21505 (LOY70_21460) murB 4984040..4985059 (-) 1020 WP_265029259.1 UDP-N-acetylmuramate dehydrogenase -
  LOY70_RS21510 (LOY70_21465) - 4985056..4985520 (-) 465 WP_265029260.1 low molecular weight protein-tyrosine-phosphatase -
  LOY70_RS21515 (LOY70_21470) kdsB 4985520..4986284 (-) 765 WP_265029261.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY70_RS21520 (LOY70_21475) - 4986281..4986466 (-) 186 WP_265029262.1 Trm112 family protein -
  LOY70_RS21525 (LOY70_21480) lpxK 4986490..4987500 (-) 1011 WP_265029263.1 tetraacyldisaccharide 4'-kinase -
  LOY70_RS21530 (LOY70_21485) - 4987500..4987928 (-) 429 WP_013694002.1 ExbD/TolR family protein -
  LOY70_RS21535 (LOY70_21490) exbB 4987925..4988560 (-) 636 WP_170842311.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY70_RS21540 (LOY70_21495) comA 4988657..4990903 (-) 2247 WP_265029264.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY70_RS21545 (LOY70_21500) - 4991049..4991564 (+) 516 WP_025214877.1 DUF2062 domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22826.90 Da        Isoelectric Point: 7.3613

>NTDB_id=628093 LOY70_RS21535 WP_170842311.1 4987925..4988560(-) (exbB) [Pseudomonas sp. B21-054]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYINTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKQ

Nucleotide


Download         Length: 636 bp        

>NTDB_id=628093 LOY70_RS21535 WP_170842311.1 4987925..4988560(-) (exbB) [Pseudomonas sp. B21-054]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCGGCACTGGGCATCGTTGC
CGAACGCCTCTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATTTGCTCGGGCAGGTGTGGGTCTGGATCAAGGACA
AACAACTGAACAAGGACAAGCTCAAGGAACTACGGGCCAGTTCGCCCCTGGGCGAAGTCCTGGCTGCAGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATCCATGAACTGGAGCGCTACAT
CAACACCCTGGGCACCATCGCCGCCATGTCCCCGCTGCTGGGGCTGTTGGGTACGGTGCTGGGTATGATCGACATTTTCA
GCGCGTTCACCGGCTCCGGCATGACTACCAACGCCGCAGTGCTGGCGGGGGGGATTTCCAAAGCCTTGATCACCACCGCT
GCCGGCCTGATGGTGGGTATCCCGGCGGTGTTCTTCCATCGGTTCCTGCAACGCCGCGTCGACGAGCTTGTGGTGGGTAT
GGAGCAGGAAGCCATCAAGTTGGTGGAGGTGGTGCAAGGTGATCGTGACGTGGACCTGGCCGGGGGCAAGCAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.238

99.526

0.848