Detailed information NTG0628071

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LOY67_RS23525
• Genome accession: NZ_CP087203
• Coordinates: 5405176..5406519 (+)
• Length: 447 a.a.
• NCBI ID: WP_265064657.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-056
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	5407509..5408656	5405176..5406519	flank	990

Gene organization within MGE regions

Location: 5405176..5408656

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY67_RS23525 (LOY67_23500)	pilR	5405176..5406519 (+)	1344	WP_265064657.1	sigma-54-dependent transcriptional regulator	Regulator
LOY67_RS23530 (LOY67_23505)	-	5406725..5407090 (-)	366	WP_265064658.1	DUF6124 family protein	-
LOY67_RS23535 (LOY67_23510)	-	5407509..5408656 (+)	1148	WP_265063257.1	IS3 family transposase	-

Sequence

Protein

• Length: 447 a.a.
• Molecular weight: 50095.41 Da
• Isoelectric Point: 6.1405

>NTDB_id=628071 LOY67_RS23525 WP_265064657.1 5405176..5406519(+) (pilR) [Pseudomonas sp. B21-056]
MNTRSRQRILIVDDEPDIRELLDITLGRMKLDTRSARNLAEAQSLLADETFDLCLTDMRLPDGTGLELVQHIQQRYAQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPSAAAPATLERCLLGDSPPMRSVRKQIEKLARSQAP
VYISGESGCGKELVARLIHEQGPRSSRGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVAD
LPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLAN
HMLQRLAATTSNPAAKLHPQALEALRNYRFPGNVRELENMLERAYTLCEHQQIEADDLRLAEGNGITDASNPDLMRVDNL
EDYLEDVERKVILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1344 bp

>NTDB_id=628071 LOY67_RS23525 WP_265064657.1 5405176..5406519(+) (pilR) [Pseudomonas sp. B21-056]
TTGAATACACGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CAGGATGAAACTCGACACCCGCAGCGCCAGGAATCTTGCCGAGGCCCAATCCCTGCTGGCGGACGAAACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACTGGCCTGGAACTGGTGCAACACATCCAGCAACGTTATGCCCAACTCCCC
GTGGCGATGATCACCGCCTACGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGAGCCTTTGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGGCTGCGGGAACTGGTCACCAGCGCCCTGCGTCTGCCGTCCGCCGCCGCCCCGGCCACCCTCG
AACGCTGCCTGCTGGGCGACTCCCCGCCGATGCGCAGCGTGCGCAAACAGATCGAAAAACTGGCCCGCAGCCAGGCGCCG
GTGTACATCAGCGGGGAATCCGGCTGCGGCAAGGAACTGGTGGCACGACTGATCCACGAACAAGGCCCCCGCTCCAGCCG
AGGCTTTGTGCCAGTCAACTGTGGGGCGATTCCGACAGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCAGCT
TCAGCGGCGCCATCGAGGACAAGCCCGGACTGTTCCAGGCCGCCCACGGTGGCACCCTGTTTCTTGATGAAGTGGCCGAC
CTGCCCCTGGCAATGCAGGTCAAGCTATTGCGGGCGATCCAGGAAAAAGCCGTGCGCGCCGTGGGCGGCCAGCAGGAGGA
AGTGGTGGATGTACGCATCCTCTGCGCAACCCACAAGGACCTGGACGCCGAAGTCGCCGCCGGGCGCTTCCGCCAGGATC
TGTACTATCGCCTGAACGTCATCGAACTGCGCGTCCCGCCCCTGCGCGAACGCCGCGAAGACATCGAACCGCTGGCCAAC
CACATGCTCCAGCGCCTGGCTGCCACCACCAGCAACCCTGCGGCCAAGCTTCATCCCCAAGCCCTCGAAGCCCTTCGCAA
CTACCGTTTCCCCGGCAACGTGCGAGAGCTGGAAAACATGCTCGAACGGGCCTACACCCTCTGCGAACACCAGCAGATCG
AAGCCGACGACCTGCGCCTGGCCGAAGGCAATGGCATCACCGATGCCAGCAACCCCGATCTGATGCGGGTCGACAACCTG
GAAGACTATCTGGAAGACGTCGAACGCAAAGTCATCCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACCGCCGCAGC
GCAGCGATTGAAGCTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGTTGGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (404-444)

• Response regulator receiver domain (Response_reg) (9-118)

• Sigma-54 interaction domain (Sigma54_activat) (138-303)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.505	99.329	0.79
pilR	Acinetobacter baumannii strain A118	49.237	100	0.506