Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LOY67_RS23520 Genome accession   NZ_CP087203
Coordinates   5403590..5405179 (+) Length   529 a.a.
NCBI ID   WP_265064656.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-056     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5398590..5410179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY67_RS23500 (LOY67_23475) pgeF 5400390..5401115 (-) 726 WP_265064652.1 peptidoglycan editing factor PgeF -
  LOY67_RS23505 (LOY67_23480) rluD 5401112..5402074 (-) 963 WP_265064653.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY67_RS23510 (LOY67_23485) - 5402225..5403241 (+) 1017 WP_265064654.1 outer membrane protein assembly factor BamD -
  LOY67_RS23515 (LOY67_23490) - 5403367..5403600 (+) 234 WP_265064655.1 PP0621 family protein -
  LOY67_RS23520 (LOY67_23495) pilS 5403590..5405179 (+) 1590 WP_265064656.1 two-component system sensor histidine kinase NtrB Regulator
  LOY67_RS23525 (LOY67_23500) pilR 5405176..5406519 (+) 1344 WP_265064657.1 sigma-54-dependent transcriptional regulator Regulator
  LOY67_RS23530 (LOY67_23505) - 5406725..5407090 (-) 366 WP_265064658.1 DUF6124 family protein -
  LOY67_RS23535 (LOY67_23510) - 5407509..5408656 (+) 1148 WP_265063257.1 IS3 family transposase -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58757.50 Da        Isoelectric Point: 7.2346

>NTDB_id=628070 LOY67_RS23520 WP_265064656.1 5403590..5405179(+) (pilS) [Pseudomonas sp. B21-056]
MIAEASSPRVRQTQRLLRLYHLYRLSIGITLVLLISSNMDNRLLAFANDDLLRSGSWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFVAGGAPSAIGNLLIVSVAIGNTLLRGRIGLLIAAVATIGIVGSSFFLGLNDSSLPGSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVTSLETLNALILQRMRTGILVLDRQRRVQLANESALNLLGMHDLIGQQID
DYSSALVERLQLWLNNPSLRPSSLTIAGTGLTLQPSFIVLGYNEQHQILVFLEDLAQVAQHAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRAWLEQFARQAHEHAAEH
QQLHLSIEPGDYITLMDPDQLTQVLDNLLRNAWRHSALAHEKAEAWLNLFVDPHSRLSTLDIIDNGPGVTPDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=628070 LOY67_RS23520 WP_265064656.1 5403590..5405179(+) (pilS) [Pseudomonas sp. B21-056]
GTGATCGCTGAGGCATCAAGTCCTCGCGTCAGACAGACGCAGCGGTTGCTGCGCCTGTATCACCTGTACCGCTTGAGTAT
CGGCATCACCCTGGTACTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGGCGTTCGCCAACGATGACCTGCTGCGCA
GTGGCAGCTGGCTATACCTGGTGCTGAACATCCTGCTGGTGGTGTTCCTGGAAAACACCCGGCGCCCTGCGCGACTGTTC
GGCTTGGCGCTCACCGATGTGCTGCTGCTGTCGTGGCTGTTCTTTGTTGCGGGCGGCGCCCCCAGCGCCATCGGCAACCT
GCTCATCGTCTCGGTCGCCATCGGCAATACGCTGTTGCGCGGCCGGATCGGCCTGTTGATCGCCGCCGTCGCCACAATCG
GCATCGTCGGATCGAGTTTCTTCCTTGGCCTGAACGACTCGAGCCTTCCCGGCAGTTATTTGCAGGCCGGCACCCTGGGC
GCGCTGTGCTTCGCCGCCGCGCTGCTGGTACAGGGCCTGACCCGGCGACTGGAAGCCAGCGAAACCCTGGCCGAGCAGCG
GGCCAGCGAGGTGACCAGCCTCGAAACCCTCAACGCCCTGATCCTGCAGCGCATGCGCACCGGCATCCTGGTCCTCGACC
GTCAACGCCGGGTGCAACTGGCCAACGAAAGCGCCTTGAACCTGCTGGGCATGCACGACCTGATCGGCCAACAAATCGAT
GACTATTCCAGCGCCCTGGTCGAACGCCTGCAACTGTGGCTGAACAACCCCAGCCTGCGCCCGTCAAGCCTGACCATTGC
CGGCACGGGCCTGACCCTGCAACCGAGCTTCATCGTCCTTGGGTACAACGAACAGCATCAGATCCTGGTATTCCTCGAAG
ACCTGGCCCAGGTTGCCCAGCATGCCCAACAACTGAAACTCGCTTCGCTGGGGCGCCTCACGGCCGGCATCGCCCATGAA
ATCCGCAACCCCCTGGGAGCGATCAGCCATGCGGCACAATTACTGCGCGAGTCCGAGGAACTGAACGACGCCGACCGGCG
TCTGACGCAGATTATTCAAGACCACTCCCAACGAATGAATCGCGTCATTGAAAACGTCCTGCAATTGTCCCGGCGCCAGC
AAACCACGCCCCAACGCCTGGATCTGCGGGCCTGGCTCGAACAGTTCGCAAGGCAAGCCCATGAACACGCGGCCGAGCAC
CAGCAACTGCACCTGAGTATCGAACCGGGGGACTACATCACCCTCATGGATCCCGACCAACTCACCCAGGTGCTCGATAA
CCTGCTGCGAAACGCCTGGCGTCACAGTGCACTGGCCCATGAGAAGGCCGAGGCCTGGCTGAACCTGTTCGTCGACCCAC
ACAGCCGTTTATCCACGTTAGACATCATCGACAACGGCCCCGGCGTAACACCGGACCAGCAGGCGCATCTGTTTGAACCG
TTCTTCACCACCAGCAGCCAGGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACTTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.381

97.732

0.58