Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LOY67_RS19790 Genome accession   NZ_CP087203
Coordinates   4590282..4592516 (-) Length   744 a.a.
NCBI ID   WP_265064068.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-056     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4585282..4597516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY67_RS19755 (LOY67_19730) murB 4585576..4586595 (-) 1020 WP_265064064.1 UDP-N-acetylmuramate dehydrogenase -
  LOY67_RS19760 (LOY67_19735) - 4586592..4587056 (-) 465 WP_265064065.1 low molecular weight protein-tyrosine-phosphatase -
  LOY67_RS19765 (LOY67_19740) kdsB 4587056..4587820 (-) 765 WP_265064066.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY67_RS19770 (LOY67_19745) - 4587817..4588002 (-) 186 WP_003179363.1 Trm112 family protein -
  LOY67_RS19775 (LOY67_19750) lpxK 4588026..4589036 (-) 1011 WP_265064067.1 tetraacyldisaccharide 4'-kinase -
  LOY67_RS19780 (LOY67_19755) - 4589036..4589464 (-) 429 WP_047699062.1 ExbD/TolR family protein -
  LOY67_RS19785 (LOY67_19760) exbB 4589461..4590096 (-) 636 WP_265067791.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY67_RS19790 (LOY67_19765) comA 4590282..4592516 (-) 2235 WP_265064068.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY67_RS19795 (LOY67_19770) - 4592661..4593176 (+) 516 WP_265064069.1 DUF2062 domain-containing protein -
  LOY67_RS19800 (LOY67_19775) - 4593336..4594115 (-) 780 WP_265064070.1 ABC transporter permease -
  LOY67_RS19805 (LOY67_19780) - 4594112..4595044 (-) 933 WP_265064071.1 ABC transporter ATP-binding protein -
  LOY67_RS19810 (LOY67_19785) - 4595177..4595800 (-) 624 WP_265064072.1 glutathione S-transferase family protein -
  LOY67_RS19815 (LOY67_19790) - 4596068..4596217 (-) 150 WP_265064073.1 hypothetical protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 81169.18 Da        Isoelectric Point: 9.5275

>NTDB_id=628065 LOY67_RS19790 WP_265064068.1 4590282..4592516(-) (comA) [Pseudomonas sp. B21-056]
MRIGLVALALGLVAPVFFPSLPPLWLIAAMPMLALMVLPFRSYPLGFFLLGLAWACLSAQSALDERLPAALDGETRWIEG
RVIGLPQYNDDVVRFELVETQSRRTRLPPSMRLAWFGGPSVSSGERWRLAVKLKRPAGLLNPHGFDYEAWLLSRGIGATG
TIKDGHRLRPAQGAWRDGVRQALAQVDAQGRSGALMALVLGDGGGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGLWPGRLPWLPWACALAFIAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFKHPDPWWAWLLAFDGVLLFDPL
ASLRPGFWLSFAAVAVLMFTFGGRLGPWRWWQTWTRAQWLVAVGLCPLLLILGLPVSLSGPLVNLLAVPWISLLVLPSAL
LGTVLLPVPFIGEALLWIAGGLLDLLFKGLALVAGRMPAWVPVPVPLWAWCIAALGAFVLLLPKGVPLRVLGWPMLLLMV
FAPREELPPRRAEIWQLDVGQGLAVLVRTRHHNLLYDAGPRFGDADAGERVVLPTLHKLGVRGLDLMLLSHADADHAGGA
QAVRNGLATTRVISGDPAALPAELQAGACDSGEQWEWDGVRFEVWQWSSALESNQKSCVLRVEANGERLLLTGDIDSHAE
RALLDGPLAVPTQWLAAPHHGSRSSSSMALLARLKPHSVLISRGQGNAFGHPHPHVMARYRRLGMAIYDSAEQGAIRLQL
GAFELPDTQAGHRRYWRNPPSAEP

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=628065 LOY67_RS19790 WP_265064068.1 4590282..4592516(-) (comA) [Pseudomonas sp. B21-056]
ATGCGCATAGGGTTGGTCGCGCTTGCACTGGGGCTGGTGGCCCCGGTTTTTTTTCCGTCGCTGCCACCGCTGTGGCTGAT
TGCGGCGATGCCGATGCTGGCGCTGATGGTGCTGCCGTTTCGAAGTTATCCACTGGGTTTTTTCCTGTTGGGGCTGGCCT
GGGCCTGCCTGTCGGCGCAATCCGCGCTGGACGAGCGCTTGCCTGCCGCGCTGGATGGCGAAACCCGCTGGATCGAAGGG
CGCGTCATCGGCTTGCCGCAATACAACGACGACGTGGTGCGTTTCGAATTGGTCGAAACCCAGTCGCGTCGTACCCGGTT
ACCGCCGTCGATGCGCCTTGCCTGGTTCGGTGGGCCATCGGTGAGCAGTGGCGAGCGTTGGCGATTGGCGGTGAAGCTCA
AGCGGCCCGCCGGGCTGTTGAACCCGCACGGTTTCGACTATGAAGCCTGGCTGTTGAGTCGGGGCATCGGCGCGACCGGT
ACGATCAAGGATGGACACCGCCTGCGACCGGCCCAGGGCGCTTGGCGCGACGGGGTGCGCCAGGCACTCGCGCAGGTCGA
TGCCCAAGGTCGTTCCGGTGCACTGATGGCATTGGTCTTGGGCGATGGTGGCGGGCTGAGCCGCGAGGACTGGCAGGTGT
TGCAAGACACCGGCACCGTCCATCTGCTGGTGATTTCCGGCCAGCACATCGGCCTGCTCGCCGGCCTGGTGTACCTGCTG
GTGGCCGGTGCGGCGCGTTATGGCCTGTGGCCGGGGCGTCTGCCGTGGTTACCTTGGGCCTGCGCCCTGGCCTTCATCGC
GGCGTTGGGCTACGGCTTGCTCGCCGGTTTTGAAGTCCCGGTGCGGCGGGCCTGCGCGATGATCGGCCTGGTGCTGCTGT
GGCGCTTGCGTTTCAAGCACCCTGACCCCTGGTGGGCGTGGCTGCTGGCCTTCGATGGAGTGCTGTTGTTCGATCCTTTG
GCCAGCCTGCGACCGGGGTTCTGGCTATCATTTGCCGCGGTCGCGGTACTGATGTTCACCTTCGGCGGCCGCCTGGGGCC
CTGGCGCTGGTGGCAAACCTGGACCCGCGCCCAGTGGCTGGTGGCGGTCGGGCTGTGCCCGTTGCTGCTGATACTGGGCT
TGCCGGTGAGTCTCAGCGGGCCGCTGGTGAACCTTTTGGCGGTGCCCTGGATCAGCCTGCTGGTGTTGCCCTCGGCATTG
CTCGGCACCGTATTGCTGCCGGTGCCGTTCATCGGTGAGGCGCTGCTCTGGATCGCCGGGGGATTGCTCGATCTGCTGTT
CAAGGGGCTCGCGCTGGTGGCCGGGCGAATGCCGGCCTGGGTCCCCGTTCCGGTCCCTCTGTGGGCGTGGTGCATCGCTG
CGCTCGGCGCTTTCGTGCTGTTGCTGCCCAAGGGCGTGCCGCTGCGTGTGCTGGGTTGGCCGATGTTGCTGCTGATGGTG
TTTGCGCCACGGGAAGAGTTGCCACCCCGGCGAGCCGAAATCTGGCAACTGGACGTTGGCCAGGGGCTGGCGGTGCTGGT
GCGCACCCGTCATCACAACCTGCTCTATGATGCGGGGCCACGCTTTGGCGACGCCGACGCAGGCGAGCGCGTCGTGCTGC
CGACCTTGCACAAGCTGGGTGTGCGCGGGCTGGACCTGATGCTCCTCAGCCATGCCGATGCCGATCACGCCGGCGGTGCC
CAGGCCGTGCGCAACGGGCTGGCAACGACCCGGGTGATCAGCGGCGATCCGGCCGCGTTGCCCGCCGAACTCCAGGCCGG
CGCCTGCGACAGCGGCGAACAGTGGGAATGGGACGGCGTCCGGTTCGAAGTGTGGCAATGGTCATCCGCCCTTGAAAGCA
ACCAGAAATCCTGCGTGCTACGGGTCGAGGCCAACGGCGAGCGGTTGCTGTTGACCGGCGACATCGACAGCCATGCCGAG
CGCGCTCTGCTCGACGGTCCCCTGGCGGTGCCGACACAATGGCTGGCCGCGCCTCATCATGGCAGTCGCAGCTCATCGTC
GATGGCGTTGCTGGCGCGCCTCAAGCCGCATTCGGTGTTGATTTCCCGGGGACAGGGCAATGCGTTCGGCCATCCCCATC
CCCACGTGATGGCCCGGTATCGACGGTTGGGCATGGCGATCTACGACAGTGCCGAACAGGGCGCCATTCGTCTGCAACTG
GGGGCTTTCGAGTTGCCGGATACCCAGGCCGGCCATCGGCGCTACTGGCGCAATCCGCCGTCTGCGGAGCCATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-674)

Domain of unknown function (DUF4131) (DUF4131)

(22-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.732

96.237

0.594