Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY67_RS19785 Genome accession   NZ_CP087203
Coordinates   4589461..4590096 (-) Length   211 a.a.
NCBI ID   WP_265067791.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-056     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4584461..4595096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY67_RS19750 (LOY67_19725) - 4584841..4585311 (-) 471 WP_265064063.1 (2Fe-2S)-binding protein -
  LOY67_RS19755 (LOY67_19730) murB 4585576..4586595 (-) 1020 WP_265064064.1 UDP-N-acetylmuramate dehydrogenase -
  LOY67_RS19760 (LOY67_19735) - 4586592..4587056 (-) 465 WP_265064065.1 low molecular weight protein-tyrosine-phosphatase -
  LOY67_RS19765 (LOY67_19740) kdsB 4587056..4587820 (-) 765 WP_265064066.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY67_RS19770 (LOY67_19745) - 4587817..4588002 (-) 186 WP_003179363.1 Trm112 family protein -
  LOY67_RS19775 (LOY67_19750) lpxK 4588026..4589036 (-) 1011 WP_265064067.1 tetraacyldisaccharide 4'-kinase -
  LOY67_RS19780 (LOY67_19755) - 4589036..4589464 (-) 429 WP_047699062.1 ExbD/TolR family protein -
  LOY67_RS19785 (LOY67_19760) exbB 4589461..4590096 (-) 636 WP_265067791.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY67_RS19790 (LOY67_19765) comA 4590282..4592516 (-) 2235 WP_265064068.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY67_RS19795 (LOY67_19770) - 4592661..4593176 (+) 516 WP_265064069.1 DUF2062 domain-containing protein -
  LOY67_RS19800 (LOY67_19775) - 4593336..4594115 (-) 780 WP_265064070.1 ABC transporter permease -
  LOY67_RS19805 (LOY67_19780) - 4594112..4595044 (-) 933 WP_265064071.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22871.00 Da        Isoelectric Point: 8.0840

>NTDB_id=628064 LOY67_RS19785 WP_265067791.1 4589461..4590096(-) (exbB) [Pseudomonas sp. B21-056]
MWELVKSGGWMMLPIILSSIVALGIAAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGSKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=628064 LOY67_RS19785 WP_265067791.1 4589461..4590096(-) (exbB) [Pseudomonas sp. B21-056]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGTGGCACTGGGTATCGCTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGTGTGACGCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTGAACAAGGACAAGCTCAAGGAGCTGCGGGCCAGTTCGCCGTTGGGCGAGATTCTGGCGGCCGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCGGCCCGGGTCATCCATGAGCTGGAGCGCTACAT
CAATGCCCTCGGTACCATCGCCGCCATGGCCCCGTTGCTGGGCCTGCTGGGCACGGTGTTGGGCATGATCGACATTTTCA
GCGCCTTTACCGGGTCCGGCATGACCACCAATGCCTCGGTGCTGGCCGGTGGTATCTCCAAAGCCTTGATCACCACCGCG
GCCGGCCTGATGGTCGGTATTCCGTCGGTATTCTTCCACCGGTTCCTGCAGCGCCGCATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGCGATCGTGACGTGGACCTGGCCGGGAGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844