Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LOY69_RS28270 Genome accession   NZ_CP087201
Coordinates   6345656..6346060 (-) Length   134 a.a.
NCBI ID   WP_025131048.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-059     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6340656..6351060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY69_RS28255 (LOY69_28200) - 6342479..6344542 (-) 2064 WP_102881160.1 methyl-accepting chemotaxis protein -
  LOY69_RS28260 (LOY69_28205) - 6344683..6345222 (-) 540 WP_102881161.1 chemotaxis protein CheW -
  LOY69_RS28265 (LOY69_28210) pilH 6345233..6345598 (-) 366 WP_011064000.1 twitching motility response regulator PilH -
  LOY69_RS28270 (LOY69_28215) pilG 6345656..6346060 (-) 405 WP_025131048.1 twitching motility response regulator PilG Regulator
  LOY69_RS28275 (LOY69_28220) gshB 6346297..6347268 (+) 972 WP_102881162.1 glutathione synthase -
  LOY69_RS28280 (LOY69_28225) - 6347399..6348298 (+) 900 WP_102881163.1 energy transducer TonB -
  LOY69_RS28285 (LOY69_28230) - 6348428..6348997 (+) 570 WP_102862072.1 YqgE/AlgH family protein -
  LOY69_RS28290 (LOY69_28235) ruvX 6348997..6349434 (+) 438 WP_102862073.1 Holliday junction resolvase RuvX -
  LOY69_RS28295 (LOY69_28240) pyrR 6349551..6350057 (+) 507 WP_060841533.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14766.31 Da        Isoelectric Point: 7.3848

>NTDB_id=628017 LOY69_RS28270 WP_025131048.1 6345656..6346060(-) (pilG) [Pseudomonas sp. B21-059]
MEQHSNALKVMVIDDSKTIRRTAEMLLKNVGCEVITAVDGFEALSKIVDHHPGIIFVDIMMPRLDGYQTCALVKNHSAFK
SIPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPDFVALAPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=628017 LOY69_RS28270 WP_025131048.1 6345656..6346060(-) (pilG) [Pseudomonas sp. B21-059]
ATGGAACAGCATTCCAACGCCTTGAAGGTGATGGTGATCGACGATTCGAAGACGATTCGCCGCACGGCCGAAATGCTGCT
GAAGAACGTCGGCTGTGAAGTCATTACCGCAGTGGACGGCTTCGAAGCGCTGTCGAAGATCGTCGACCACCACCCCGGAA
TCATTTTCGTCGACATCATGATGCCGCGGCTCGACGGTTATCAGACCTGTGCGCTGGTGAAGAACCACAGCGCGTTCAAG
TCCATTCCCGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGTATCGTCGGCTCCGACCAGTT
TTTGACCAAACCCTTCAGCAAGGAAGAACTGCTGAGCGCAATCAAGGCCCACGTTCCGGACTTTGTCGCGCTTGCGCCAC
AGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76

93.284

0.709
  vicR Streptococcus mutans UA159

43.59

87.313

0.381