Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LOY69_RS25735 Genome accession   NZ_CP087201
Coordinates   5795126..5796454 (+) Length   442 a.a.
NCBI ID   WP_265073774.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-059     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5790126..5801454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY69_RS25715 (LOY69_25660) pgeF 5791760..5792485 (-) 726 WP_265073773.1 peptidoglycan editing factor PgeF -
  LOY69_RS25720 (LOY69_25665) rluD 5792482..5793444 (-) 963 WP_102865461.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY69_RS25725 (LOY69_25670) - 5793595..5794617 (+) 1023 WP_102882249.1 outer membrane protein assembly factor BamD -
  LOY69_RS25730 (LOY69_25675) - 5794742..5794975 (+) 234 WP_102882404.1 PP0621 family protein -
  LOY69_RS25735 (LOY69_25680) pilR 5795126..5796454 (+) 1329 WP_265073774.1 sigma-54-dependent transcriptional regulator Regulator
  LOY69_RS25740 (LOY69_25685) thiO 5796451..5797551 (-) 1101 WP_110652086.1 glycine oxidase ThiO -
  LOY69_RS25745 (LOY69_25690) - 5797608..5798009 (-) 402 WP_102882252.1 type IV pilin protein -
  LOY69_RS25750 (LOY69_25695) - 5798025..5798186 (-) 162 WP_265073775.1 hypothetical protein -
  LOY69_RS25755 (LOY69_25700) - 5798518..5798958 (-) 441 WP_123390422.1 PilX N-terminal domain-containing pilus assembly protein -
  LOY69_RS25760 (LOY69_25705) - 5799000..5799710 (-) 711 WP_265073776.1 PilW family protein -
  LOY69_RS25765 (LOY69_25710) pilV 5799719..5800150 (-) 432 WP_265073777.1 type IV pilus modification protein PilV -
  LOY69_RS25770 (LOY69_25715) - 5800540..5801064 (+) 525 WP_102865453.1 GspH/FimT family protein -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 49677.37 Da        Isoelectric Point: 8.2173

>NTDB_id=628014 LOY69_RS25735 WP_265073774.1 5795126..5796454(+) (pilR) [Pseudomonas sp. B21-059]
MNPKPRVLVVDEAMEVRALVEITLGRMRLHTQSARTLQEARTHLARERFDLCLTDLHLPDGSGLDLLLHIRQCHPQLPVA
LLSNDPGTQASALEVGACDLLHKPLHPMRLREWISSRLKRLPTTTKNLPDHQLLGHSPPMDNLRQHIDKLAPSLAAVYIS
GESGSGKERVARLIHQLGPRARAPFIPVNCGAIPGELMESEFFGHRKGSFSGALADQPGLFQAAEGGTLFLDEVADLPLA
MQVKLLRALQERSVRPVGSQEERAVDVRILCATHKDLKCEVESGRFRQDLYYRLNVIELRVPALRERPGDIEILARHILQ
RLAKSGDKPATQLSPQALQALERYDFPGNVRELENLLERAQTLCEGPWIELSDLHLPVSEHQDVPSPSLPPNLDLALHLQ
QVERHLLLQALEESRWNRTVAARRLSLSLRSMRYRMKKLGLN

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=628014 LOY69_RS25735 WP_265073774.1 5795126..5796454(+) (pilR) [Pseudomonas sp. B21-059]
ATGAACCCAAAGCCCAGGGTGCTGGTGGTCGATGAGGCCATGGAAGTCCGTGCCCTCGTGGAAATCACCCTCGGCCGCAT
GCGCCTGCACACCCAAAGTGCCCGCACCTTGCAGGAAGCCCGGACTCACCTGGCCCGGGAGCGCTTCGACCTGTGCCTGA
CAGACCTGCATTTGCCGGATGGCAGCGGACTGGACCTGCTGCTGCATATTCGCCAATGCCACCCTCAATTGCCGGTCGCA
CTTCTAAGCAATGACCCAGGCACGCAGGCCAGCGCCCTGGAAGTCGGGGCTTGCGACCTGCTGCACAAGCCTCTACACCC
CATGCGCCTTCGAGAATGGATAAGCAGCAGACTGAAGCGGCTGCCCACCACCACAAAAAACCTACCCGACCATCAGTTGT
TGGGACATTCACCACCCATGGACAACCTGCGCCAACACATCGACAAGTTGGCCCCCAGCCTGGCGGCGGTCTACATCAGC
GGCGAATCCGGCAGTGGCAAGGAGCGAGTGGCGCGTTTGATCCACCAGTTGGGTCCAAGGGCCAGGGCGCCCTTCATTCC
GGTCAACTGTGGCGCCATTCCTGGCGAACTGATGGAGAGTGAGTTTTTCGGTCACCGCAAAGGCAGCTTCAGTGGCGCCC
TGGCTGATCAGCCTGGACTGTTCCAGGCCGCTGAGGGGGGAACCCTGTTCCTCGACGAGGTCGCCGACCTGCCTCTAGCC
ATGCAGGTGAAGCTACTGCGTGCACTGCAGGAAAGGTCTGTGCGTCCGGTGGGCAGCCAGGAGGAAAGAGCCGTCGATGT
GCGGATTCTCTGTGCCACTCACAAGGATCTGAAGTGCGAGGTAGAGTCCGGCCGCTTTCGCCAGGATCTCTACTACCGCT
TGAATGTGATCGAACTGCGAGTTCCCGCGCTGCGCGAGCGTCCAGGAGATATCGAGATACTGGCGCGGCATATTCTGCAA
CGCCTGGCCAAATCCGGCGACAAGCCTGCCACCCAACTAAGCCCGCAAGCACTGCAAGCCCTGGAGCGCTACGACTTTCC
CGGCAACGTACGTGAACTGGAGAACCTGCTGGAGCGGGCCCAGACCCTTTGCGAGGGTCCGTGGATCGAGCTGAGCGACC
TGCATCTGCCTGTCAGTGAACACCAGGACGTCCCCTCCCCCTCGCTCCCTCCCAACCTGGACCTCGCGCTGCACCTGCAA
CAGGTGGAGCGCCATTTACTGCTCCAGGCCCTGGAGGAAAGCCGCTGGAACCGCACGGTGGCGGCCCGACGGCTGAGTCT
GTCCTTGCGTTCGATGCGTTACCGCATGAAGAAGCTTGGCCTGAATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(399-439)

Response regulator receiver domain (Response_reg)

(7-113)

Sigma-54 interaction domain (Sigma54_activat)

(133-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.573

100

0.62
  pilR Acinetobacter baumannii strain A118

44.06

100

0.462