Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY69_RS08910 Genome accession   NZ_CP087201
Coordinates   1957216..1957851 (+) Length   211 a.a.
NCBI ID   WP_162884118.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-059     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1952216..1962851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY69_RS08890 (LOY69_08875) - 1952465..1953397 (+) 933 WP_102863931.1 ABC transporter ATP-binding protein -
  LOY69_RS08895 (LOY69_08880) - 1953394..1954173 (+) 780 WP_102863930.1 ABC transporter permease -
  LOY69_RS08900 (LOY69_08885) - 1954227..1954742 (-) 516 WP_102863929.1 DUF2062 domain-containing protein -
  LOY69_RS08905 (LOY69_08890) comA 1954882..1957113 (+) 2232 WP_265074389.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY69_RS08910 (LOY69_08895) exbB 1957216..1957851 (+) 636 WP_162884118.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY69_RS08915 (LOY69_08900) - 1957848..1958276 (+) 429 WP_102863926.1 ExbD/TolR family protein -
  LOY69_RS08920 (LOY69_08905) lpxK 1958276..1959286 (+) 1011 WP_110595196.1 tetraacyldisaccharide 4'-kinase -
  LOY69_RS08925 (LOY69_08910) - 1959310..1959495 (+) 186 WP_011060103.1 Trm112 family protein -
  LOY69_RS08930 (LOY69_08915) kdsB 1959492..1960256 (+) 765 WP_110595197.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY69_RS08935 (LOY69_08920) - 1960256..1960720 (+) 465 WP_110595198.1 low molecular weight protein-tyrosine-phosphatase -
  LOY69_RS08940 (LOY69_08925) murB 1960717..1961736 (+) 1020 WP_102878923.1 UDP-N-acetylmuramate dehydrogenase -
  LOY69_RS08945 (LOY69_08930) - 1961988..1962458 (+) 471 WP_102878924.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22939.10 Da        Isoelectric Point: 7.3617

>NTDB_id=628005 LOY69_RS08910 WP_162884118.1 1957216..1957851(+) (exbB) [Pseudomonas sp. B21-059]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKEKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=628005 LOY69_RS08910 WP_162884118.1 1957216..1957851(+) (exbB) [Pseudomonas sp. B21-059]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCTGTGGGCATCATCGC
CGAGCGTTTGTGGACCCTGCGGGCCAGCCGAGTCACCCCGCCCCATTTGCTGGGCCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGAGAAACTCAAGGAATTGCGTGCCGATTCGCCCCTGGGAGAGATCCTGGCAGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAGGAAGCCGCCGCCCGGGTCATTCACGAACTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCCTTGCTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCA
GTTCGTTCATGGGATCGGGCATGACCAGCAACGCTGCAGTGCTTGCCGGTGGTATTTCCAAGGCACTGATCACTACTGCC
GCCGGTTTGATGGTGGGCATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGATGTCGACCTGGCTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.678

100

0.877