Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LOY69_RS08905 Genome accession   NZ_CP087201
Coordinates   1954882..1957113 (+) Length   743 a.a.
NCBI ID   WP_265074389.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-059     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1949882..1962113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY69_RS08880 (LOY69_08865) - 1951007..1951666 (+) 660 WP_170003437.1 transglutaminase-like domain-containing protein -
  LOY69_RS08885 (LOY69_08870) - 1951709..1952332 (+) 624 WP_110652138.1 glutathione S-transferase family protein -
  LOY69_RS08890 (LOY69_08875) - 1952465..1953397 (+) 933 WP_102863931.1 ABC transporter ATP-binding protein -
  LOY69_RS08895 (LOY69_08880) - 1953394..1954173 (+) 780 WP_102863930.1 ABC transporter permease -
  LOY69_RS08900 (LOY69_08885) - 1954227..1954742 (-) 516 WP_102863929.1 DUF2062 domain-containing protein -
  LOY69_RS08905 (LOY69_08890) comA 1954882..1957113 (+) 2232 WP_265074389.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY69_RS08910 (LOY69_08895) exbB 1957216..1957851 (+) 636 WP_162884118.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY69_RS08915 (LOY69_08900) - 1957848..1958276 (+) 429 WP_102863926.1 ExbD/TolR family protein -
  LOY69_RS08920 (LOY69_08905) lpxK 1958276..1959286 (+) 1011 WP_110595196.1 tetraacyldisaccharide 4'-kinase -
  LOY69_RS08925 (LOY69_08910) - 1959310..1959495 (+) 186 WP_011060103.1 Trm112 family protein -
  LOY69_RS08930 (LOY69_08915) kdsB 1959492..1960256 (+) 765 WP_110595197.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY69_RS08935 (LOY69_08920) - 1960256..1960720 (+) 465 WP_110595198.1 low molecular weight protein-tyrosine-phosphatase -
  LOY69_RS08940 (LOY69_08925) murB 1960717..1961736 (+) 1020 WP_102878923.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81449.94 Da        Isoelectric Point: 10.5486

>NTDB_id=628004 LOY69_RS08905 WP_265074389.1 1954882..1957113(+) (comA) [Pseudomonas sp. B21-059]
MVTGMLALAAGLLALGFMPVLPPGWLLLLMAIGGLMLLPFRTHPVAFFLFGLAWACASGQWALDDRLPQSLDGQTRWLEG
RVVGLPEPGAGVVRFELKDAQSRRERLPQRIRLAWHGGPLVNSGERWRLAVKLRRPAGLLNLHGFDYEAWLLARRIGATG
TVKDGQLLAPARQAWRDGLRQRLLAVEAHGRAAGLAALVMGDGSGLTREDWQLLQDTGTVHLMVISGQHISLLAAVIYLA
VAALARYGLWPARWPWLPWACALAFVGALGYGLLAGFDVPVQRACVMVALVLLWRWRFRHLRAWWPLLLALNAVLLFEPL
ASLQPGFWLSYAAVAVLIFTFAGRLGSWRWWQSWTRAQWLMGIGLLPPLLALGLPISLSGPLANLLAVPWISLLVLPPAL
LGCLLLPVPYVGEGLLWLAGGLLDGLFRLLGAMAGLWPAWVAPLIPLWVWGLSSLGALLLLLPKGVPLRVLGWPLLLLAV
WPPQDPVPEGEVEIWQLDVGQGLSFILRTRDHAMLYDAGARVADFDLGERVVLPTLHKLGIRRLDLMLLSHADNDHAGGA
LAVQRGIPVSQVRSGEPEALPAALQSAPCDSGLSWHWNGARFTLWQWTGAADGNQASCVLLVEAGGERLLLTGDIDVHAE
RALLDSPLAVRIHWLQAPHHGSRTSSSMALLRRLAPKAVLISRGRGNAFGHPHPLVVARYRQLGMVIHDSAEQGALKLRL
GTFSQPESLRQQRRFWRDWPAMP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=628004 LOY69_RS08905 WP_265074389.1 1954882..1957113(+) (comA) [Pseudomonas sp. B21-059]
ATGGTTACAGGGATGCTGGCACTGGCCGCAGGACTGCTGGCGCTGGGTTTCATGCCGGTGCTGCCGCCCGGCTGGTTGTT
GCTGCTGATGGCGATAGGGGGGCTGATGTTGCTGCCTTTTCGTACACATCCGGTGGCATTTTTTTTGTTCGGTTTGGCCT
GGGCCTGTGCATCCGGGCAATGGGCGCTGGATGATCGCCTGCCTCAGTCCCTGGATGGGCAAACCCGCTGGCTGGAAGGG
CGGGTGGTCGGCTTGCCGGAACCGGGGGCGGGCGTGGTGCGCTTTGAGCTCAAGGATGCCCAGTCCCGACGAGAGCGCCT
GCCGCAGCGAATTCGCCTGGCCTGGCACGGTGGGCCACTCGTCAATAGCGGCGAACGCTGGCGCCTGGCGGTCAAGCTGC
GGCGTCCTGCCGGTCTGCTCAATCTTCACGGTTTCGATTACGAAGCCTGGCTGCTGGCCCGGCGCATTGGGGCCACCGGC
ACAGTCAAGGATGGGCAACTGCTGGCGCCGGCACGCCAAGCCTGGCGTGACGGTCTGCGCCAGCGTTTACTCGCGGTCGA
GGCCCACGGCCGCGCCGCAGGCCTGGCGGCATTGGTGATGGGCGACGGTTCGGGGCTGACGCGGGAAGATTGGCAACTGT
TGCAGGACACTGGCACGGTGCACCTGATGGTGATATCCGGACAGCACATCAGTCTGCTGGCCGCAGTGATCTACCTTGCA
GTGGCAGCGCTGGCTCGTTACGGGCTTTGGCCCGCGCGTTGGCCCTGGCTGCCCTGGGCCTGCGCCCTGGCCTTTGTCGG
GGCGCTGGGCTACGGCCTGCTGGCAGGGTTCGATGTGCCGGTGCAGAGGGCCTGCGTGATGGTTGCGCTGGTGCTGCTCT
GGCGCTGGCGCTTTCGTCACCTGCGGGCTTGGTGGCCCTTGTTGCTGGCGTTGAATGCAGTGCTGTTGTTCGAGCCCCTG
GCCAGCTTGCAGCCAGGGTTCTGGCTGTCCTATGCCGCGGTGGCGGTGCTCATCTTCACCTTTGCCGGGCGCCTGGGTTC
CTGGCGTTGGTGGCAGAGTTGGACGCGCGCCCAGTGGTTGATGGGTATTGGCCTGTTGCCACCCTTGCTGGCCCTTGGCT
TGCCCATCAGTCTCAGTGGTCCGCTGGCCAATCTGCTGGCGGTGCCCTGGATCAGTCTGCTGGTCCTGCCCCCGGCCTTG
CTGGGCTGTCTGTTGTTGCCTGTGCCTTATGTGGGTGAAGGGCTGTTATGGCTGGCGGGTGGCCTGCTGGATGGGCTGTT
CCGCTTACTGGGGGCGATGGCCGGATTATGGCCAGCCTGGGTGGCGCCGTTGATCCCCCTTTGGGTTTGGGGCCTGAGCA
GCCTGGGCGCGCTGTTGTTGCTGTTGCCCAAGGGCGTGCCACTGCGGGTGCTGGGTTGGCCGTTGTTGCTGTTGGCCGTC
TGGCCTCCCCAGGACCCTGTACCCGAGGGCGAGGTGGAGATCTGGCAGCTGGATGTGGGGCAGGGTTTGTCGTTCATCCT
GCGTACCCGTGATCACGCGATGTTGTATGACGCCGGTGCGCGAGTCGCGGATTTCGACCTGGGGGAGCGAGTGGTGCTGC
CGACGCTGCATAAACTTGGCATTCGACGGTTGGACTTGATGCTGCTCAGCCACGCCGATAACGATCATGCCGGAGGCGCC
CTGGCAGTCCAGCGCGGGATACCGGTGAGCCAGGTGCGCAGCGGCGAGCCCGAGGCTTTGCCGGCTGCCCTGCAGTCGGC
CCCCTGTGATAGCGGGCTGAGCTGGCACTGGAATGGCGCCCGCTTCACGCTGTGGCAGTGGACGGGGGCGGCAGACGGCA
ACCAGGCTTCCTGTGTGCTGCTGGTCGAGGCCGGCGGCGAACGCCTGCTGCTCACCGGCGATATTGATGTCCATGCTGAG
CGGGCCTTGCTCGACAGTCCGCTGGCGGTTCGCATTCACTGGTTGCAGGCGCCCCATCATGGCAGCCGTACCTCATCGTC
CATGGCCTTGCTCCGGCGGCTGGCGCCGAAGGCGGTGCTGATTTCCCGGGGGCGGGGCAATGCCTTTGGCCATCCTCATC
CCCTGGTGGTGGCGCGCTACCGGCAATTGGGCATGGTGATTCATGACAGTGCCGAGCAAGGCGCACTGAAGCTGCGGCTG
GGGACTTTCAGCCAGCCTGAAAGCCTGCGCCAACAGCGGCGCTTCTGGCGCGACTGGCCAGCAATGCCTTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-682)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.877

96.501

0.616