Detailed information NTG0627990

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LOY66_RS24605
• Genome accession: NZ_CP087200
• Coordinates: 5597575..5598921 (+)
• Length: 448 a.a.
• NCBI ID: WP_265072391.1
• Uniprot ID: -
• Organism: Pseudomonas viciae strain B21-062
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	5599775..5601127	5597575..5598921	flank	854

Gene organization within MGE regions

Location: 5597575..5601127

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY66_RS24605 (LOY66_24590)	pilR	5597575..5598921 (+)	1347	WP_265072391.1	sigma-54 dependent transcriptional regulator	Regulator
LOY66_RS24610 (LOY66_24595)	-	5599007..5599372 (-)	366	WP_135847230.1	DUF6124 family protein	-
LOY66_RS24615 (LOY66_24600)	-	5599775..5601076 (-)	1302	WP_135847938.1	IS4 family transposase	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50138.52 Da
• Isoelectric Point: 5.5774

>NTDB_id=627990 LOY66_RS24605 WP_265072391.1 5597575..5598921(+) (pilR) [Pseudomonas viciae strain B21-062]
MNTRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLTEAQALLAGETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPIATPVATIERCLLGDSPPMCSVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRSNQGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLA
NHMLQRLAANTGSPPARLHPQALDALRNYRFPGNVRELENMLERAYTLCEQQQIETDDLRLAESSSAIDAGNPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=627990 LOY66_RS24605 WP_265072391.1 5597575..5598921(+) (pilR) [Pseudomonas viciae strain B21-062]
TTGAATACTCGCTCACGGCAACGAATCCTGATCGTCGATGACGAGCCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTACCGAGGCCCAAGCCCTGCTGGCGGGCGAAACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAACACATCCAGCAGCGTTACCCGCAACTCCCC
GTGGCAATGATTACGGCCTACGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGGGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGCCTGCGAGAACTGGTCACCAGCGCCTTGCGCCTGCCGCCGATCGCCACGCCGGTCGCCACCA
TCGAGCGCTGCCTGCTGGGCGATTCCCCGCCGATGTGCAGCGTACGCAAACAGATCGAAAAACTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGTGAGTCAGGCTGCGGCAAGGAACTGGTCGCCCGGCTGATCCATGAACAGGGTCCCCGTTCCAA
CCAGGGGTTTGTGCCGGTCAACTGTGGGGCAATTCCCACGGAGCTGATGGAAAGCGAGTTTTTTGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAACCCGGGCTGTTCCAGGCCGCCCACGGCGGGACGCTGTTTCTCGATGAAGTGGCC
GACCTGCCCTTGGCAATGCAGGTCAAACTGTTGCGAGCGATCCAGGAAAAGGCCGTGCGCGCCGTCGGCGGCCAGCAGGA
AGAAGTGGTGGATGTACGCATCCTCTGCGCCACCCACAAGGACCTGGACGGCGAAGTGGCCGCCGGGCGCTTTCGTCAGG
ATCTGTACTATCGGCTGAACGTCATCGAACTGCGCGTCCCGCCCTTGCGTGAGCGTCGCGAAGACATCGAACCGCTGGCC
AATCACATGCTCCAGCGGCTGGCGGCCAACACCGGTAGCCCACCGGCCAGGTTGCATCCCCAGGCGTTGGACGCTCTGAG
GAACTACCGCTTCCCGGGCAACGTGCGGGAACTGGAAAATATGCTCGAACGTGCCTACACCCTTTGCGAACAGCAACAGA
TTGAAACTGACGACCTGCGCTTGGCCGAGAGCAGTAGTGCTATCGACGCCGGCAACCCCGATTTGATGCAGGTCGACAAC
CTGGAAGATTACCTGGAAGACGTCGAGCGCAAGCTCATCCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGTTGGGGTTGGATTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Response regulator receiver domain (Response_reg) (9-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.054	99.107	0.783
pilR	Acinetobacter baumannii strain A118	49.455	100	0.507