NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	LOY66_RS24490	Genome accession	NZ_CP087200
Coordinates	5580421..5581290 (+)	Length	289 a.a.
NCBI ID	WP_135847215.1	Uniprot ID	-
Organism	Pseudomonas viciae strain B21-062
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5575421..5586290

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY66_RS24465 (LOY66_24450)	-	5575541..5575837 (+)	297	WP_256454432.1	DUF2845 domain-containing protein	-
LOY66_RS24470 (LOY66_24455)	-	5576149..5576502 (-)	354	WP_135847211.1	BON domain-containing protein	-
LOY66_RS24475 (LOY66_24460)	pilA	5576849..5577274 (-)	426	WP_135847212.1	pilin	Machinery gene
LOY66_RS24480 (LOY66_24465)	pilB	5577499..5579199 (+)	1701	WP_135847213.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LOY66_RS24485 (LOY66_24470)	pilC	5579202..5580419 (+)	1218	WP_135847214.1	type II secretion system F family protein	Machinery gene
LOY66_RS24490 (LOY66_24475)	pilD	5580421..5581290 (+)	870	WP_135847215.1	A24 family peptidase	Machinery gene
LOY66_RS24495 (LOY66_24480)	coaE	5581302..5581925 (+)	624	WP_135847216.1	dephospho-CoA kinase	-
LOY66_RS24500 (LOY66_24485)	yacG	5581922..5582128 (+)	207	WP_135847217.1	DNA gyrase inhibitor YacG	-
LOY66_RS24505 (LOY66_24490)	-	5582125..5582340 (-)	216	WP_003185533.1	hypothetical protein	-
LOY66_RS24510 (LOY66_24495)	-	5582404..5583090 (-)	687	WP_135847218.1	energy-coupling factor ABC transporter permease	-
LOY66_RS24515 (LOY66_24500)	-	5583165..5583578 (-)	414	WP_135847219.1	tautomerase family protein	-
LOY66_RS24520 (LOY66_24505)	-	5583796..5584152 (+)	357	WP_265072388.1	LysR family transcriptional regulator	-
LOY66_RS24525 (LOY66_24510)	-	5584094..5584624 (+)	531	WP_265073116.1	LysR substrate-binding domain-containing protein	-
LOY66_RS24530 (LOY66_24515)	-	5584693..5585319 (+)	627	WP_003205682.1	DUF1780 domain-containing protein	-
LOY66_RS24535 (LOY66_24520)	-	5585316..5585843 (+)	528	WP_135847221.1	MOSC domain-containing protein	-
LOY66_RS24540 (LOY66_24525)	-	5585896..5586069 (+)	174	WP_039593877.1	DUF3094 family protein	-

Sequence

Protein

Download Length: 289 a.a. Molecular weight: 31996.14 Da Isoelectric Point: 7.7093

                                >NTDB_id=627988 LOY66_RS24490 WP_135847215.1 5580421..5581290(+) (pilD) [Pseudomonas viciae strain B21-062]

MPLTDFFVLYPLAFVLTALLLGLIVGSFLNVLVWRLPKMLTREWRLQAHDLLGLPAEAPGPIYNLMLPHSQCPHCDHRIR

AWENIPLLSYLILRGRCSNCTAPIGKRYPLTELACGALSAFVAWHFGFGWQAAMVMVLSWGLLGMSLIDAEHQLLPDSLV

LPLLWLGLIVNSFGLFVSLNQAMWGAVAGYLTLWSVFWVFKLLTGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG

AVIGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF

Nucleotide

Download Length: 870 bp

                                >NTDB_id=627988 LOY66_RS24490 WP_135847215.1 5580421..5581290(+) (pilD) [Pseudomonas viciae strain B21-062]

ATGCCCCTGACTGACTTCTTCGTGCTGTATCCACTGGCCTTCGTGCTCACTGCGTTATTGCTCGGATTGATCGTCGGCAG

TTTCCTCAATGTCCTGGTGTGGCGCCTGCCAAAGATGCTCACCCGCGAATGGCGCCTGCAAGCCCACGACCTGTTGGGAC

TGCCGGCCGAAGCACCCGGCCCGATCTACAACCTGATGCTGCCCCATTCCCAGTGCCCTCACTGCGACCATCGCATCCGC

GCCTGGGAAAACATCCCATTGTTGAGCTACCTGATATTGCGCGGTCGCTGTTCCAACTGCACCGCCCCCATTGGCAAGCG

TTACCCGCTGACCGAACTGGCCTGCGGCGCCTTGTCAGCGTTCGTCGCCTGGCACTTCGGCTTTGGCTGGCAGGCCGCGA

TGGTGATGGTGTTGAGCTGGGGCCTGCTGGGCATGAGCCTGATCGACGCCGAGCATCAGTTGCTGCCCGATAGTCTGGTA

TTACCGTTGTTGTGGCTGGGCTTGATCGTCAACAGCTTCGGCCTGTTCGTTTCCTTGAACCAGGCGATGTGGGGCGCGGT

GGCCGGCTATCTGACGCTGTGGTCGGTGTTTTGGGTATTCAAGTTGCTCACCGGCAAGGAAGGTATGGGCTACGGGGATT

TCAAGCTGCTGGCGATGCTGGGTGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACCTTGCTGCTGTCGTCGCTGGTGGGC

GCGGTTATCGGAGTCATTGTGCTGCGCCTGCGTGATGCCCCTGGGTCGACGCAGATCCCCTTCGGACCTTATCTGGCAAT

TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)

Type IV leader peptidase family (Peptidase_A24)

(136-245)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	53.169	98.27	0.522
pilD	Vibrio campbellii strain DS40M4	50.877	98.616	0.502
pilD	Neisseria gonorrhoeae MS11	47.387	99.308	0.471
pilD	Acinetobacter baumannii D1279779	46.996	97.924	0.46
pilD	Acinetobacter nosocomialis M2	46.996	97.924	0.46

Detailed information NTG0627988