Detailed information NTG0627964

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LOY34_RS23075
• Genome accession: NZ_CP087199
• Coordinates: 5010144..5011013 (+)
• Length: 289 a.a.
• NCBI ID: WP_195885041.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-009
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5005144..5016013

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY34_RS23050 (LOY34_23025)	-	5005432..5006355 (-)	924	WP_100782491.1	hypothetical protein	-
LOY34_RS23055 (LOY34_23030)	-	5006681..5007997 (-)	1317	WP_258664054.1	phage integrase central domain-containing protein	-
LOY34_RS23065 (LOY34_23040)	-	5008305..5008715 (-)	411	WP_195885039.1	pilin	-
LOY34_RS23070 (LOY34_23045)	pilC	5008933..5010141 (+)	1209	WP_258664055.1	type II secretion system F family protein	Machinery gene
LOY34_RS23075 (LOY34_23050)	pilD	5010144..5011013 (+)	870	WP_195885041.1	A24 family peptidase	Machinery gene
LOY34_RS23080 (LOY34_23055)	coaE	5011013..5011636 (+)	624	WP_045200827.1	dephospho-CoA kinase	-
LOY34_RS23085 (LOY34_23060)	yacG	5011633..5011833 (+)	201	WP_195885042.1	DNA gyrase inhibitor YacG	-
LOY34_RS23090 (LOY34_23065)	-	5011838..5012527 (-)	690	WP_195885043.1	energy-coupling factor ABC transporter permease	-
LOY34_RS23095 (LOY34_23070)	-	5012573..5013034 (-)	462	WP_195885044.1	hypothetical protein	-
LOY34_RS23100 (LOY34_23075)	-	5013157..5013786 (+)	630	WP_010220617.1	DUF1780 domain-containing protein	-
LOY34_RS23105 (LOY34_23080)	-	5013955..5014128 (+)	174	WP_045200819.1	DUF3094 family protein	-
LOY34_RS23110 (LOY34_23085)	-	5014213..5015508 (+)	1296	WP_045200816.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31891.07 Da
• Isoelectric Point: 8.0488

>NTDB_id=627964 LOY34_RS23075 WP_195885041.1 5010144..5011013(+) (pilD) [Pseudomonas sp. B21-009]
MNLLNTLASQPLMYLSFALLLGLIVGSFLNVLVHRLPIMLERQWQAEAREVLALPSEAQAPRFDLFLPPSQCPHCAHRIR
PWENIPVVSYLALRGRCSACQARISPRYPLVELACGALTLFAAWHLGFTAAALALMVLSWGLLAMSLIDIEHHLLPDALV
LPLLWLGLIANAFELFVPLEDALWGTVAGYLSLWSVFWVFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLLG
AVIGLVMLRLQRKQASTPIPFGPYLAIAGWIALLWGGQITTSYLKYSGF

Nucleotide

• Length: 870 bp

>NTDB_id=627964 LOY34_RS23075 WP_195885041.1 5010144..5011013(+) (pilD) [Pseudomonas sp. B21-009]
ATGAACCTGTTGAACACCCTGGCCAGCCAGCCACTGATGTACCTGAGCTTCGCCCTGTTGCTCGGGCTGATTGTCGGCAG
TTTTCTCAATGTGCTGGTGCATCGCCTGCCGATCATGCTCGAACGCCAATGGCAGGCCGAGGCCCGTGAGGTGCTGGCGT
TGCCCAGCGAGGCACAAGCGCCGCGCTTCGACCTGTTTTTACCGCCCTCGCAATGCCCGCATTGCGCCCACCGCATTCGC
CCGTGGGAAAACATACCGGTGGTGAGTTACCTGGCCTTGCGCGGGCGCTGTTCCGCTTGCCAGGCGCGCATCAGCCCGCG
CTACCCGCTGGTGGAGCTTGCCTGCGGGGCGCTGACGCTGTTTGCCGCCTGGCATCTGGGTTTTACCGCTGCGGCCCTGG
CGCTGATGGTGCTGAGTTGGGGCCTGCTGGCCATGAGCTTGATCGATATCGAGCACCATCTGTTGCCCGATGCCCTGGTG
CTGCCGTTGTTGTGGCTGGGGCTGATCGCCAATGCCTTTGAGCTGTTCGTGCCGCTGGAGGATGCCCTGTGGGGCACGGT
GGCCGGTTACCTGAGCCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGGTCACCGGCAAAGAGGGCATGGGCTATGGCGATT
TCAAGTTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGATTTTGCCGCTGACCTTGCTGTTGTCGTCGCTGCTGGGG
GCGGTGATCGGCCTGGTTATGCTGCGCCTGCAGCGCAAGCAGGCGAGCACGCCGATCCCCTTTGGTCCCTATCTGGCCAT
TGCGGGCTGGATCGCGCTGCTCTGGGGTGGTCAAATAACCACTTCCTATCTGAAATATTCCGGATTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.571	96.886	0.519
pilD	Vibrio campbellii strain DS40M4	48.951	98.962	0.484
pilD	Acinetobacter baumannii D1279779	48.54	94.81	0.46
pilD	Acinetobacter nosocomialis M2	47.81	94.81	0.453
pilD	Neisseria gonorrhoeae MS11	49.02	88.235	0.433