Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LOY34_RS19480 Genome accession   NZ_CP087199
Coordinates   4237240..4239462 (-) Length   740 a.a.
NCBI ID   WP_195884756.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-009     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4232240..4244462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY34_RS19445 (LOY34_19425) murB 4232631..4233650 (-) 1020 WP_195884753.1 UDP-N-acetylmuramate dehydrogenase -
  LOY34_RS19450 (LOY34_19430) - 4233647..4234111 (-) 465 WP_195884754.1 low molecular weight protein-tyrosine-phosphatase -
  LOY34_RS19455 (LOY34_19435) kdsB 4234111..4234875 (-) 765 WP_195884755.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY34_RS19460 (LOY34_19440) - 4234872..4235057 (-) 186 WP_038994143.1 Trm112 family protein -
  LOY34_RS19465 (LOY34_19445) lpxK 4235096..4236106 (-) 1011 WP_258663905.1 tetraacyldisaccharide 4'-kinase -
  LOY34_RS19470 (LOY34_19450) - 4236106..4236537 (-) 432 WP_045195189.1 biopolymer transporter ExbD -
  LOY34_RS19475 (LOY34_19455) exbB 4236534..4237169 (-) 636 WP_176794233.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY34_RS19480 (LOY34_19460) comA 4237240..4239462 (-) 2223 WP_195884756.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY34_RS19485 (LOY34_19465) - 4239606..4240148 (+) 543 WP_045195193.1 DUF2062 domain-containing protein -
  LOY34_RS19490 (LOY34_19470) - 4240116..4240895 (-) 780 WP_045195195.1 ABC transporter permease -
  LOY34_RS19495 (LOY34_19475) - 4240892..4241824 (-) 933 WP_045195197.1 ABC transporter ATP-binding protein -
  LOY34_RS19500 (LOY34_19480) - 4241979..4242602 (-) 624 WP_123567236.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80946.92 Da        Isoelectric Point: 9.5005

>NTDB_id=627962 LOY34_RS19480 WP_195884756.1 4237240..4239462(-) (comA) [Pseudomonas sp. B21-009]
MRTGMLALALGLLSLGFLPALPPVWILVLLAIAGLCCLPTRLWPAGLFLLGLSWACVSAQWALDERLAAQFDGRTLWIEG
RVTGLPEQGARSVRFELSDAESRRGQLPRRMQLSWFGGPAVNSGEYWRLAVSLKRPAGLLNPHGPDQEANLLARRIGATG
SVKAGERLLPATAAWRDDLRQRLLSVDAQGREAALVALILGDGGALARQDWQALQATGTVHLLVISGQHIGLLAGLVYAL
IAGLARLGWWPQRLPWLPWACALAFAAALAYGLLAGFQVPVQRACMMLAMVLLWRLRFRHLGVGLPLLLALDAVLLWEPL
ASLQPGFWLSFMAVAILIFTFSGRLGAWNSWLAWSRAQWLIAIGLLPVLLAQGLPVSLTAPLINLLAVPWISLAVLPMAL
LGTVLLPVPLLGEGLLWLAGGLLDGLFRLLAHVAVWQPAWIPEPLPFWAWLLVCLGALLLLLPRGIPMRVLGWPLLLLAV
FAPRERVPQGQVEVWQLDVGQGLAFVLRTRHHAMLYDAGPAMGDFDLGERVVLPSLRKLGVSKLDLMLLSHADADHAGGA
RAVQRGLPVLRVQAGEAAALPEVLQAQPCSSGERWQWDGVSFSLWQWQDAGDSNQDSCVLLVEANGEKLLLTGDLDARGE
RAWARDWQATTVDWLQSPHHGSRSSSSEALLKATTPRGVLISRGRYNAFGHPHPEVMARYRTHGIQSYDNVDHGALRLRL
GVFGEPEGLRAQRRFWREPR

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=627962 LOY34_RS19480 WP_195884756.1 4237240..4239462(-) (comA) [Pseudomonas sp. B21-009]
ATGCGCACAGGGATGTTGGCGCTTGCACTCGGGCTGCTCAGCCTCGGGTTCCTGCCGGCTTTGCCGCCCGTCTGGATACT
TGTCCTGCTGGCAATTGCCGGGCTTTGCTGCCTGCCTACGCGGCTGTGGCCCGCCGGGCTGTTTCTGCTGGGCTTGAGCT
GGGCCTGCGTCTCGGCGCAATGGGCGTTGGATGAGCGCCTGGCGGCGCAGTTCGATGGCCGTACCCTGTGGATAGAGGGC
CGGGTTACTGGTTTGCCGGAGCAGGGTGCGCGCTCGGTGAGGTTCGAGTTGAGCGATGCCGAGTCGCGCCGGGGGCAATT
GCCAAGGCGCATGCAGCTCAGCTGGTTCGGCGGCCCGGCGGTCAATAGCGGTGAATACTGGCGTTTGGCAGTCAGCCTCA
AGCGCCCCGCAGGCTTGCTCAATCCTCACGGCCCGGACCAGGAGGCCAACCTGTTGGCCCGGCGCATCGGCGCCACCGGC
AGCGTCAAGGCCGGCGAGCGGCTGCTGCCGGCAACGGCGGCCTGGCGGGATGATCTGCGCCAGCGCTTGCTCAGCGTTGA
TGCCCAGGGCCGGGAGGCGGCGCTGGTGGCCTTGATACTCGGCGATGGCGGCGCTTTGGCGCGCCAGGACTGGCAAGCGC
TGCAGGCCACCGGCACGGTGCACTTGCTGGTGATTTCCGGCCAGCATATTGGCCTGTTGGCCGGGCTGGTATACGCCTTG
ATTGCCGGGCTGGCGCGCCTGGGCTGGTGGCCGCAACGGCTACCCTGGCTGCCTTGGGCCTGCGCGCTGGCCTTTGCCGC
AGCACTGGCCTATGGCTTGCTGGCCGGGTTTCAGGTGCCGGTGCAGCGCGCCTGCATGATGTTGGCCATGGTGCTGCTCT
GGCGCCTGCGCTTTCGTCACCTGGGTGTCGGGCTGCCGTTGTTGCTGGCGCTCGATGCAGTGCTGCTGTGGGAACCATTG
GCCAGCTTGCAGCCGGGCTTCTGGCTGTCGTTCATGGCCGTGGCCATTCTGATCTTCACCTTCAGCGGCCGCCTTGGCGC
CTGGAACTCCTGGCTGGCCTGGAGTCGCGCCCAGTGGTTGATCGCCATCGGCTTGCTGCCGGTGCTGCTGGCGCAAGGTT
TGCCGGTGAGCCTGACGGCGCCGCTGATCAATCTGCTGGCAGTGCCGTGGATCAGCCTTGCGGTGTTGCCAATGGCGTTG
CTCGGCACCGTGTTGCTGCCGGTGCCGCTTCTGGGGGAAGGCTTGCTGTGGCTTGCCGGTGGCCTGCTCGACGGCTTGTT
TCGCTTGCTGGCGCATGTGGCGGTTTGGCAACCGGCCTGGATCCCAGAACCATTGCCGTTCTGGGCCTGGTTGCTGGTGT
GCCTGGGGGCATTGCTGCTGTTGTTGCCGCGCGGCATACCGATGCGGGTGCTGGGCTGGCCATTGTTGCTGTTGGCGGTG
TTTGCGCCCCGAGAGCGCGTGCCGCAGGGGCAGGTAGAGGTCTGGCAGCTGGATGTCGGCCAGGGGCTGGCCTTTGTGCT
GCGCACCCGGCACCACGCCATGTTGTATGACGCCGGCCCGGCCATGGGCGATTTCGATCTGGGCGAGCGGGTAGTGCTTC
CCAGCTTGCGCAAGCTGGGGGTAAGCAAGCTCGACCTGATGTTGCTCAGCCACGCCGACGCCGATCACGCCGGGGGCGCC
CGCGCCGTGCAGCGCGGTTTGCCGGTGCTGCGGGTGCAGGCTGGTGAGGCTGCGGCCTTGCCTGAAGTGCTGCAAGCGCA
GCCGTGCAGCAGCGGCGAACGCTGGCAGTGGGACGGGGTGAGTTTTTCACTGTGGCAGTGGCAGGATGCTGGCGACAGCA
ACCAGGATTCCTGTGTGCTGCTGGTCGAGGCAAATGGCGAAAAACTGCTGCTCACCGGCGATCTCGATGCCCGCGGCGAA
CGGGCCTGGGCGCGGGACTGGCAGGCGACCACAGTCGACTGGTTGCAATCGCCCCATCACGGCAGTCGCAGCTCCTCCAG
CGAGGCCTTGTTAAAGGCTACTACCCCGCGCGGCGTGCTGATTTCGCGCGGGCGCTACAACGCCTTCGGGCATCCGCACC
CGGAGGTCATGGCGCGCTATCGGACGCATGGTATTCAGTCCTATGACAATGTCGACCACGGTGCCTTGCGCCTGCGCCTG
GGTGTGTTCGGCGAGCCTGAGGGGTTGCGTGCCCAGCGGCGTTTCTGGCGTGAACCGAGATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-680)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.798

98.243

0.597
  comA Ralstonia pseudosolanacearum GMI1000

33.096

100

0.377