Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY34_RS19475 Genome accession   NZ_CP087199
Coordinates   4236534..4237169 (-) Length   211 a.a.
NCBI ID   WP_176794233.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-009     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4231534..4242169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY34_RS19445 (LOY34_19425) murB 4232631..4233650 (-) 1020 WP_195884753.1 UDP-N-acetylmuramate dehydrogenase -
  LOY34_RS19450 (LOY34_19430) - 4233647..4234111 (-) 465 WP_195884754.1 low molecular weight protein-tyrosine-phosphatase -
  LOY34_RS19455 (LOY34_19435) kdsB 4234111..4234875 (-) 765 WP_195884755.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY34_RS19460 (LOY34_19440) - 4234872..4235057 (-) 186 WP_038994143.1 Trm112 family protein -
  LOY34_RS19465 (LOY34_19445) lpxK 4235096..4236106 (-) 1011 WP_258663905.1 tetraacyldisaccharide 4'-kinase -
  LOY34_RS19470 (LOY34_19450) - 4236106..4236537 (-) 432 WP_045195189.1 biopolymer transporter ExbD -
  LOY34_RS19475 (LOY34_19455) exbB 4236534..4237169 (-) 636 WP_176794233.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY34_RS19480 (LOY34_19460) comA 4237240..4239462 (-) 2223 WP_195884756.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY34_RS19485 (LOY34_19465) - 4239606..4240148 (+) 543 WP_045195193.1 DUF2062 domain-containing protein -
  LOY34_RS19490 (LOY34_19470) - 4240116..4240895 (-) 780 WP_045195195.1 ABC transporter permease -
  LOY34_RS19495 (LOY34_19475) - 4240892..4241824 (-) 933 WP_045195197.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22860.07 Da        Isoelectric Point: 6.8759

>NTDB_id=627961 LOY34_RS19475 WP_176794233.1 4236534..4237169(-) (exbB) [Pseudomonas sp. B21-009]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627961 LOY34_RS19475 WP_176794233.1 4236534..4237169(-) (exbB) [Pseudomonas sp. B21-009]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCGATCGTCGC
CGAGCGTCTCTGGACCTTGCGCGCCAGCCGGGTCACGCCACCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AACAGCTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAGATCCTTGCCGCAGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAGGAATGCATCGAAGAGGCCGCAGCGCGTGTCATTCACGAGCTGGAGCGCTACAT
CAACGCCCTGGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCTTGCTCGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGTACCGGCATGACCACCAATGCCGCAGTGCTCGCCGGCGGTATCTCCAAGGCACTGATCACCACCGCG
GCCGGCCTGATGGTCGGTATTCCGTCGGTGTTCTTCCACCGTTTCCTGCAGCGTCGTATCGACGAGCTGGTGGTCGGTAT
GGAGCAGGAAGCGATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGTGATGTCGACCTGGCCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853