Detailed information NTG0627910

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LOY37_RS23020
• Genome accession: NZ_CP087197
• Coordinates: 5034333..5035202 (+)
• Length: 289 a.a.
• NCBI ID: WP_258594917.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-012
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5029333..5040202

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY37_RS22990 (LOY37_22965)	-	5029377..5029637 (-)	261	WP_258715807.1	AlpA family transcriptional regulator	-
LOY37_RS22995 (LOY37_22970)	-	5029802..5030695 (-)	894	WP_258715808.1	DUF6387 family protein	-
LOY37_RS23000 (LOY37_22975)	-	5030873..5032186 (-)	1314	WP_258715809.1	phage integrase central domain-containing protein	-
LOY37_RS23010 (LOY37_22985)	-	5032494..5032904 (-)	411	WP_258715810.1	pilin	-
LOY37_RS23015 (LOY37_22990)	pilC	5033122..5034330 (+)	1209	WP_258715811.1	type II secretion system F family protein	Machinery gene
LOY37_RS23020 (LOY37_22995)	pilD	5034333..5035202 (+)	870	WP_258594917.1	A24 family peptidase	Machinery gene
LOY37_RS23025 (LOY37_23000)	coaE	5035202..5035825 (+)	624	WP_258715812.1	dephospho-CoA kinase	-
LOY37_RS23030 (LOY37_23005)	yacG	5035822..5036022 (+)	201	WP_195885042.1	DNA gyrase inhibitor YacG	-
LOY37_RS23035 (LOY37_23010)	-	5036027..5036716 (-)	690	WP_258715813.1	energy-coupling factor ABC transporter permease	-
LOY37_RS23040 (LOY37_23015)	-	5036762..5037223 (-)	462	WP_213603237.1	hypothetical protein	-
LOY37_RS23045 (LOY37_23020)	-	5037346..5037975 (+)	630	WP_010220617.1	DUF1780 domain-containing protein	-
LOY37_RS23050 (LOY37_23025)	-	5038144..5038317 (+)	174	WP_045200819.1	DUF3094 family protein	-
LOY37_RS23055 (LOY37_23030)	-	5038402..5039697 (+)	1296	WP_045200816.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31919.12 Da
• Isoelectric Point: 8.0488

>NTDB_id=627910 LOY37_RS23020 WP_258594917.1 5034333..5035202(+) (pilD) [Pseudomonas sp. B21-012]
MNLLNTLASQPLMYLSFALLLGLIVGSFLNVLVHRLPIMLERQWQAEAREVLALPSEAQAPRFDLFLPPSQCPHCAHRIR
PWENIPVVSYLALRGRCSACQARISPRYPLVELACGALTLFAAWHLGFTVAALALMVLSWGLLAMSLIDIEHHLLPDALV
LPLLWLGLIANAFELFVPLEDALWGTVAGYLSLWSVFWVFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLLG
AVIGLVMLRLQRKQASTPIPFGPYLAIAGWIALLWGGQITTSYLKYSGF

Nucleotide

• Length: 870 bp

>NTDB_id=627910 LOY37_RS23020 WP_258594917.1 5034333..5035202(+) (pilD) [Pseudomonas sp. B21-012]
ATGAACCTGTTGAACACCCTGGCCAGCCAGCCACTGATGTACCTGAGCTTCGCCCTGTTGCTCGGGCTGATTGTCGGCAG
TTTTCTCAATGTGCTGGTGCATCGCCTGCCGATCATGCTCGAACGCCAATGGCAGGCCGAGGCCCGTGAGGTGCTGGCGT
TGCCCAGCGAGGCACAAGCGCCGCGCTTCGATCTGTTTTTACCGCCCTCGCAATGCCCGCATTGCGCACATCGCATTCGC
CCGTGGGAAAACATACCGGTGGTGAGTTACCTGGCCTTGCGCGGGCGCTGTTCCGCTTGCCAGGCGCGCATCAGCCCGCG
CTATCCGCTGGTGGAGCTTGCCTGCGGGGCGCTGACGCTGTTTGCCGCCTGGCATCTGGGTTTTACCGTCGCGGCCCTGG
CGTTGATGGTGCTGAGTTGGGGCCTGCTGGCCATGAGCTTGATCGATATCGAGCACCATCTGTTGCCCGATGCCCTGGTG
CTGCCGTTGTTGTGGTTGGGGCTGATCGCCAATGCCTTTGAACTGTTCGTGCCGCTGGAGGATGCCTTGTGGGGCACGGT
GGCCGGTTACCTGAGCCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGGTCACTGGCAAAGAGGGCATGGGCTATGGCGATT
TCAAGTTGCTGGCCATGCTTGGCGCCTGGGGCGGCTGGCAGATTTTGCCGCTGACCTTGCTGTTGTCGTCGCTGCTGGGG
GCGGTGATCGGCCTGGTTATGCTGCGCCTGCAGCGCAAGCAGGCGAGCACGCCGATCCCCTTTGGTCCCTATCTGGCCAT
TGCGGGCTGGATCGCGCTGCTCTGGGGTGGTCAAATAACCACTTCCTATCTGAAATATTCCGGATTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.929	96.886	0.522
pilD	Vibrio campbellii strain DS40M4	48.951	98.962	0.484
pilD	Acinetobacter baumannii D1279779	48.54	94.81	0.46
pilD	Acinetobacter nosocomialis M2	47.81	94.81	0.453
pilD	Neisseria gonorrhoeae MS11	49.02	88.235	0.433