Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA1   Type   Machinery gene
Locus tag   AA2Tth_RS06380 Genome accession   NZ_AP019792
Coordinates   1191499..1191972 (+) Length   157 a.a.
NCBI ID   WP_143585823.1    Uniprot ID   -
Organism   Thermus thermophilus strain AA2-20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1186499..1196972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA2Tth_RS06355 (TthAA220_12450) ilvN 1187474..1187986 (-) 513 WP_011173280.1 acetolactate synthase small subunit -
  AA2Tth_RS06360 (TthAA220_12460) ilvB 1187983..1189671 (-) 1689 WP_143585820.1 biosynthetic-type acetolactate synthase large subunit -
  AA2Tth_RS06370 (TthAA220_12470) - 1189827..1190807 (-) 981 WP_018461695.1 YpdA family putative bacillithiol disulfide reductase -
  AA2Tth_RS06375 (TthAA220_12480) pilA/pilA1 1190973..1191443 (+) 471 WP_143585821.1 GspH/FimT family protein Machinery gene
  AA2Tth_RS06380 (TthAA220_12490) pilA/pilA1 1191499..1191972 (+) 474 WP_143585823.1 GspH/FimT family protein Machinery gene
  AA2Tth_RS06385 (TthAA220_12500) pilA/pilA2 1191990..1192550 (+) 561 WP_242004637.1 type II secretion system protein Machinery gene
  AA2Tth_RS06390 (TthAA220_12510) pilA/pilA3 1192547..1193248 (+) 702 WP_143585827.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  AA2Tth_RS06395 (TthAA220_12520) comZ 1193259..1194935 (+) 1677 WP_143585829.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene
  AA2Tth_RS06400 (TthAA220_12530) pilV 1195156..1195506 (+) 351 WP_143585831.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  AA2Tth_RS06410 (TthAA220_12540) - 1195755..1196135 (+) 381 WP_018461702.1 DUF1640 domain-containing protein -
  AA2Tth_RS06415 (TthAA220_12550) - 1196211..1196753 (+) 543 WP_143585835.1 Uma2 family endonuclease -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16566.99 Da        Isoelectric Point: 10.7805

>NTDB_id=62787 AA2Tth_RS06380 WP_143585823.1 1191499..1191972(+) (pilA/pilA1) [Thermus thermophilus strain AA2-20]
MKKPHGLSLVELVIVLAVLGVLLALGTGYLRSDRLAVNQAARSLAAQVTRARLEAIRRNAFVGIQFLTGGAGGYVVFVDQ
NRNGTYDAGDTPIQTVNFGQGDWAQVRLTALTGPVALVFDPRGIPQDFTGATVTLSNRAGTYTKGVSLSPQGRTSLP

Nucleotide


Download         Length: 474 bp        

>NTDB_id=62787 AA2Tth_RS06380 WP_143585823.1 1191499..1191972(+) (pilA/pilA1) [Thermus thermophilus strain AA2-20]
ATGAAGAAGCCCCACGGCCTAAGCCTCGTAGAGCTCGTGATCGTCCTCGCCGTCCTGGGGGTCCTCCTGGCCCTGGGCAC
GGGCTACCTGCGCTCCGACCGCCTCGCCGTGAACCAGGCGGCCCGTTCCCTCGCGGCCCAGGTAACCCGAGCGAGGCTCG
AGGCCATCCGCCGGAACGCCTTCGTGGGGATCCAGTTCCTCACCGGCGGGGCAGGGGGGTATGTGGTCTTCGTGGACCAG
AACCGAAACGGTACCTACGACGCGGGGGACACCCCCATCCAGACAGTGAACTTCGGGCAGGGGGACTGGGCCCAGGTGCG
GCTTACCGCCCTAACAGGCCCCGTGGCCCTGGTCTTTGACCCCCGGGGCATCCCGCAAGACTTCACGGGAGCGACCGTGA
CCCTAAGCAACCGCGCCGGAACCTACACTAAAGGGGTTTCCCTAAGCCCCCAAGGGAGGACGAGCCTGCCATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)

Type II transport protein GspH (GspH)

(40-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA1 Thermus thermophilus HB27

56.693

80.892

0.459

Multiple sequence alignment