Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LOY31_RS24820 Genome accession   NZ_CP087192
Coordinates   5520792..5522381 (+) Length   529 a.a.
NCBI ID   WP_258713629.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-021     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5515792..5527381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY31_RS24800 (LOY31_24780) pgeF 5517593..5518315 (-) 723 WP_258712323.1 peptidoglycan editing factor PgeF -
  LOY31_RS24805 (LOY31_24785) rluD 5518312..5519274 (-) 963 WP_007959567.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY31_RS24810 (LOY31_24790) - 5519427..5520443 (+) 1017 WP_007959566.1 outer membrane protein assembly factor BamD -
  LOY31_RS24815 (LOY31_24795) - 5520569..5520802 (+) 234 WP_039771683.1 PP0621 family protein -
  LOY31_RS24820 (LOY31_24800) pilS 5520792..5522381 (+) 1590 WP_258713629.1 PAS domain-containing sensor histidine kinase Regulator
  LOY31_RS24825 (LOY31_24805) pilR 5522378..5523724 (+) 1347 WP_258712324.1 sigma-54 dependent transcriptional regulator Regulator
  LOY31_RS24830 (LOY31_24810) thiO 5523784..5524884 (-) 1101 WP_258712325.1 glycine oxidase ThiO -
  LOY31_RS24835 (LOY31_24815) - 5524941..5525342 (-) 402 WP_039771691.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58460.26 Da        Isoelectric Point: 6.6677

>NTDB_id=627767 LOY31_RS24820 WP_258713629.1 5520792..5522381(+) (pilS) [Pseudomonas sp. B21-021]
MIAEADNADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDELLRNGSWLYLVLNILLVVFLENIRRPAQLF
GLALVDILLLCGVFYAAGGVASAIGNLLIVSVAISNTLLRRRIGLLIAAIATLGIVGLSFLLSFSHPLSANDYLQAGTLG
ALCFAASLLVQGLIRRLEVSENLAELRASEVVGLEALNALILQRMRTGILVLDEQRRVQLANHSAKTLLGQTHLEGDLID
EHSSALVERLQLWLNNPTLRPQSLKIAGNGLELQPSFIALELSPNRQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELDGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEQFVSESREQAGER
QHIHLHIGPGDFRTLMDPGQLTQILDNLLRNGWRHSALLHDPAEVWLTLSIDPESTLAVLEVQDNGPGVPLDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=627767 LOY31_RS24820 WP_258713629.1 5520792..5522381(+) (pilS) [Pseudomonas sp. B21-021]
GTGATCGCTGAGGCCGACAACGCCGACAGCAAACAGGCTCAGCGACTGCTGCGCCTCTATCATCTGTACCGTTTGAGTGT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACCTCGGCCAACGACGAGTTGCTGCGCA
ATGGCAGCTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTGTTCCTCGAGAATATCCGCCGCCCCGCCCAACTGTTC
GGCCTGGCACTGGTCGACATCCTGCTGCTGTGCGGCGTGTTCTATGCGGCGGGCGGTGTGGCCAGTGCGATCGGCAACCT
GCTGATCGTTTCGGTGGCCATCAGCAACACCTTGCTGCGACGACGCATCGGCCTGCTGATCGCCGCCATCGCCACCCTCG
GCATCGTCGGACTCAGCTTTCTGCTGAGCTTCAGCCATCCCCTGAGCGCCAACGACTATCTGCAGGCCGGCACCCTCGGT
GCCTTGTGCTTTGCCGCCTCGCTGCTGGTGCAGGGGTTGATCCGTCGTCTCGAAGTCAGTGAGAACCTGGCCGAGCTGCG
CGCCAGCGAAGTGGTGGGGCTCGAAGCCCTCAACGCGTTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTCGACG
AACAGCGCCGGGTGCAACTGGCCAATCACAGCGCCAAAACCCTGCTGGGCCAGACACACCTTGAAGGCGACTTGATCGAC
GAGCACTCGAGCGCGTTGGTCGAACGCCTGCAACTGTGGCTGAACAACCCGACCCTGCGCCCACAAAGCCTGAAAATCGC
CGGCAATGGCCTGGAGCTGCAGCCGAGCTTCATTGCCCTGGAACTGAGCCCGAACCGCCAGACCCTGGTGTTTCTCGAAG
ACCTCGCCCAGATCGCCCAGCAGGCCCAGCAATTGAAACTCGCCGCACTGGGCCGGCTGACTGCCGGTATCGCCCATGAA
ATCCGCAATCCGCTGGGAGCCATCAGTCATGCCGCGCAGCTGTTGCAGGAATCCGAGGAACTCGACGGCGCGGATCGGCG
TCTGACGCAGATCATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGTCAGC
AGAGCGCACCGCAACGGCTGGATCTCAAACCGTGGCTGGAGCAGTTCGTCAGCGAGAGCCGCGAACAGGCCGGCGAGCGC
CAGCACATTCATCTGCACATTGGCCCGGGGGATTTCCGTACGTTGATGGATCCCGGCCAGCTCACGCAGATTCTCGACAA
TCTGTTACGCAACGGCTGGCGCCACAGTGCCCTTTTGCACGATCCGGCCGAGGTCTGGCTGACGCTGTCGATCGACCCCG
AAAGCACGCTGGCCGTGCTCGAAGTGCAGGACAACGGCCCCGGCGTGCCGCTGGATCAACAGGCTCACCTGTTCGAACCG
TTCTTTACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAAGCGCGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.566

100

0.607