Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LOY25_RS25630 Genome accession   NZ_CP087188
Coordinates   5702673..5704010 (+) Length   445 a.a.
NCBI ID   WP_258682649.1    Uniprot ID   -
Organism   Pseudomonas laurylsulfatiphila strain B21-025     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5697673..5709010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY25_RS25605 (LOY25_25560) pgeF 5699111..5699836 (-) 726 WP_218480313.1 peptidoglycan editing factor PgeF -
  LOY25_RS25610 (LOY25_25565) rluD 5699833..5700795 (-) 963 WP_007990414.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY25_RS25615 (LOY25_25570) - 5700947..5701969 (+) 1023 WP_218480312.1 outer membrane protein assembly factor BamD -
  LOY25_RS25620 (LOY25_25575) - 5702095..5702328 (+) 234 WP_218480311.1 PP0621 family protein -
  LOY25_RS25625 (LOY25_25580) - 5702434..5702676 (+) 243 WP_218480310.1 hypothetical protein -
  LOY25_RS25630 (LOY25_25585) pilR 5702673..5704010 (+) 1338 WP_258682649.1 sigma-54-dependent transcriptional regulator Regulator
  LOY25_RS25635 (LOY25_25590) thiO 5704105..5705205 (-) 1101 WP_258682650.1 glycine oxidase ThiO -
  LOY25_RS25640 (LOY25_25595) - 5705262..5705663 (-) 402 WP_007970514.1 type IV pilin protein -
  LOY25_RS25645 (LOY25_25600) - 5705678..5706091 (-) 414 WP_258682651.1 hypothetical protein -
  LOY25_RS25650 (LOY25_25605) - 5706078..5706518 (-) 441 WP_420832674.1 pilus assembly PilX family protein -
  LOY25_RS25655 (LOY25_25610) - 5706568..5707275 (-) 708 WP_258682653.1 PilW family protein -
  LOY25_RS25660 (LOY25_25615) pilV 5707272..5707721 (-) 450 WP_258682654.1 type IV pilus modification protein PilV -
  LOY25_RS25665 (LOY25_25620) - 5707718..5708191 (-) 474 WP_258682655.1 GspH/FimT family pseudopilin -
  LOY25_RS25670 (LOY25_25625) - 5708316..5708855 (+) 540 WP_258682656.1 GspH/FimT family pseudopilin -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49666.00 Da        Isoelectric Point: 6.9261

>NTDB_id=627668 LOY25_RS25630 WP_258682649.1 5702673..5704010(+) (pilR) [Pseudomonas laurylsulfatiphila strain B21-025]
MNTRPRQKVLIVDDESDIRELLEITLGRMKLETFNARNVGEAQSLLKSETFDLCLTDMQLPDGTGLELVQHIQQRHPQVQ
VAMITAYASLETAINVLKAGAFDFLTKPVDLPRLRELVTSALLLPARGGDIDRRLLGDSLPMRNLRKHITKLANSHATVY
ISGESGSGKELVARLIHDQSPRAKQPFIAINCAAIPSELLESEFFGHRKGSFSGAIEDKPGLFQTAHGGTLLLDEVADLP
LAMQVKLLRAIQEKAVRSVGGQQEVAVDVRILCATHKDLGAEVAAGRFRHDLYYRLNVIELRVPPLRERRDDIEVLASHI
LKRLAADTGQPAARLHPQALDALKSYRFPGNVRELENMLERAHTLCEDNQIEAGDLRLAEGNCAAEGGIPDLTRIDNLDT
YLENVERQLLLQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=627668 LOY25_RS25630 WP_258682649.1 5702673..5704010(+) (pilR) [Pseudomonas laurylsulfatiphila strain B21-025]
TTGAACACGAGACCACGACAAAAAGTCTTGATCGTCGATGACGAATCAGACATACGCGAACTCCTGGAAATCACCCTGGG
AAGGATGAAACTGGAGACGTTCAACGCTCGCAATGTCGGCGAAGCGCAATCACTGCTGAAAAGCGAAACTTTCGACCTCT
GCCTGACCGACATGCAGTTGCCGGATGGCACCGGCCTGGAGTTGGTACAACACATCCAGCAACGTCACCCTCAGGTCCAG
GTGGCGATGATCACCGCCTATGCCAGTCTCGAAACCGCAATCAACGTGCTCAAGGCCGGAGCATTCGACTTCCTCACCAA
ACCGGTGGACCTTCCGCGCCTGCGTGAACTGGTCACCAGCGCCCTGCTGCTTCCTGCCCGCGGGGGCGACATTGATCGCC
GTTTGCTGGGCGACTCATTACCCATGCGCAACCTGCGCAAGCACATCACCAAACTGGCCAACAGTCATGCGACGGTATAT
ATCAGCGGAGAATCCGGCAGTGGCAAGGAATTGGTCGCGCGCCTGATCCATGATCAAAGCCCCCGCGCCAAGCAGCCGTT
CATTGCGATCAACTGCGCGGCGATTCCCTCTGAGCTGTTGGAGAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCG
GCGCCATCGAAGACAAACCCGGTCTGTTCCAGACCGCTCACGGCGGCACCCTGCTCCTCGACGAAGTGGCCGACCTGCCG
CTGGCCATGCAAGTCAAACTGCTACGCGCCATTCAGGAGAAAGCCGTACGCAGCGTCGGCGGGCAACAGGAAGTGGCAGT
GGATGTACGCATTCTCTGCGCCACACACAAGGACCTCGGCGCCGAAGTCGCCGCCGGGCGATTTCGGCATGATCTTTACT
ACCGTTTGAATGTGATCGAACTCCGGGTGCCGCCCTTGCGCGAGCGTCGCGATGACATCGAGGTGCTGGCCAGCCACATA
CTCAAGCGCCTGGCCGCCGATACGGGTCAACCGGCAGCCAGACTCCACCCCCAAGCCCTTGATGCACTGAAAAGCTATCG
CTTCCCGGGCAATGTGCGGGAACTGGAAAATATGCTCGAACGGGCTCATACCTTGTGCGAGGACAATCAGATTGAAGCCG
GCGACCTGCGCCTGGCTGAGGGCAATTGCGCAGCTGAAGGTGGAATACCGGACCTGACCCGGATCGACAATCTGGACACC
TATCTGGAAAACGTCGAACGCCAACTGCTGCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCTCAACG
GTTGAATCTGTCATTCAGGTCGATGCGTTACAGGCTCAAGAAATTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

76.072

99.551

0.757
  pilR Acinetobacter baumannii strain A118

47.826

100

0.494