Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LOY35_RS20030 Genome accession   NZ_CP087184
Coordinates   4674866..4677100 (-) Length   744 a.a.
NCBI ID   WP_258626084.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-028     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4669866..4682100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY35_RS19995 (LOY35_19960) murB 4670239..4671258 (-) 1020 WP_258626071.1 UDP-N-acetylmuramate dehydrogenase -
  LOY35_RS20000 (LOY35_19965) - 4671255..4671719 (-) 465 WP_258626073.1 low molecular weight protein-tyrosine-phosphatase -
  LOY35_RS20005 (LOY35_19970) kdsB 4671719..4672483 (-) 765 WP_258626081.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY35_RS20010 (LOY35_19975) - 4672480..4672665 (-) 186 WP_003179363.1 Trm112 family protein -
  LOY35_RS20015 (LOY35_19980) lpxK 4672689..4673698 (-) 1010 Protein_3962 tetraacyldisaccharide 4'-kinase -
  LOY35_RS20020 (LOY35_19985) - 4673698..4674126 (-) 429 WP_258626083.1 biopolymer transporter ExbD -
  LOY35_RS20025 (LOY35_19990) exbB 4674123..4674758 (-) 636 WP_258633689.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY35_RS20030 (LOY35_19995) comA 4674866..4677100 (-) 2235 WP_258626084.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY35_RS20035 (LOY35_20000) - 4677245..4677760 (+) 516 WP_258626086.1 DUF2062 domain-containing protein -
  LOY35_RS20040 (LOY35_20005) - 4677958..4678737 (-) 780 WP_258626088.1 ABC transporter permease -
  LOY35_RS20045 (LOY35_20010) - 4678734..4679666 (-) 933 WP_258626089.1 ABC transporter ATP-binding protein -
  LOY35_RS20050 (LOY35_20015) - 4679800..4680423 (-) 624 WP_258626090.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 80979.06 Da        Isoelectric Point: 9.9641

>NTDB_id=627553 LOY35_RS20030 WP_258626084.1 4674866..4677100(-) (comA) [Pseudomonas sp. B21-028]
MRTGWVALALGLVAPVFFPALPPLWLVAAMPILALMVLPFRAYPLGFFLLGLAWACLSAQTALDERLPLALDGETRWVEG
RVIGLPQYSEGVVRFDLVEARSRRTRLPTSMRLAWFGGPPVSSGERWRVAVKLKRPAGLLNPHGFDHEAWLLSRGIGATG
TVKDGRRLQSAQGAWRDGVRQALAQVDAQGRTGALMALVLGDGGGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLMYLL
VAGAARYGLWPGRLPWLPWACALAFIAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFKHPDPWWSWLLAFDGVLLFDPL
ASLRPGFWLSFAAVAVLMFTFGGRLGPWRWWQTWTRAQWLVALGLCPLLLILGLPVSLSGPLVNLLAVPWISLLVLPLAL
LGTVLLSVPFIGEALLWIAGGLLDLLFKGLALVAGRMPAWVPVPVPPWAWCIAALGAVVLLLPKGVPLRVLGWPMLLLMV
FAPREEVPPGRAEVWQLDVGQGLAVLVRTRHHSLLYDAGPRFGDADAGERVVLPTLRKLNVQKLDLMLLSHADADHAGGA
QAVRNGLATLRVISGDPAALSVALGAEGCDSGEQWEWDGVRFEVWQWSSALESNQKSCVLLVEANGERLLLTGDIDTRAE
RALLDGPLAVPTQWLAAPHHGSRSSSSMALLSRLKPHSVLISRGQGNAFGHPHPQVMARYRRLGMAIYDSAEQGAIRLQL
GAFERPDSQAGHRRYWRDPPPAGP

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=627553 LOY35_RS20030 WP_258626084.1 4674866..4677100(-) (comA) [Pseudomonas sp. B21-028]
ATGCGCACAGGGTGGGTTGCGCTTGCACTGGGGCTGGTGGCCCCGGTTTTCTTTCCGGCGTTGCCGCCGTTGTGGCTGGT
CGCAGCGATGCCGATATTGGCGCTGATGGTGCTGCCGTTTCGAGCGTATCCGCTGGGTTTTTTCCTGTTGGGGTTGGCCT
GGGCCTGCCTGTCGGCGCAAACCGCGTTGGACGAACGTCTGCCTCTCGCGCTGGATGGCGAAACCCGCTGGGTCGAAGGG
CGTGTCATCGGTCTGCCGCAATACAGTGAAGGCGTGGTGCGCTTCGATCTGGTCGAGGCCCGATCGCGTCGCACCCGGCT
ACCGACATCAATGCGCCTGGCCTGGTTCGGGGGGCCGCCGGTGAGCAGTGGCGAGCGTTGGCGGGTGGCAGTGAAGCTCA
AGCGGCCCGCCGGACTGCTGAACCCCCACGGTTTCGACCATGAAGCCTGGCTGTTGAGTCGGGGTATTGGCGCAACCGGT
ACGGTCAAGGACGGCCGTCGCTTGCAATCGGCCCAGGGCGCTTGGCGCGACGGGGTGCGCCAGGCACTGGCGCAGGTCGA
TGCTCAAGGCCGCACCGGTGCGCTGATGGCATTGGTCCTGGGCGATGGCGGCGGGTTGAGCCGTGAAGACTGGCAGGTGT
TGCAAGACACCGGCACGGTCCATCTGTTGGTGATTTCCGGTCAGCACATCGGCCTGCTCGCCGGCCTGATGTACCTGCTG
GTGGCCGGCGCGGCGCGTTACGGCCTGTGGCCGGGACGTCTGCCGTGGTTGCCTTGGGCTTGTGCCCTGGCTTTCATCGC
GGCCCTGGGCTACGGCTTGCTTGCCGGGTTCGAGGTGCCGGTGCGGCGGGCCTGCGCAATGATCGGCCTGGTGCTGCTGT
GGCGCTTGCGCTTCAAGCATCCCGATCCCTGGTGGTCGTGGCTGCTGGCCTTCGATGGGGTGCTGTTGTTCGATCCCTTG
GCCAGCCTGCGGCCGGGGTTCTGGCTGTCATTTGCCGCGGTCGCGGTACTGATGTTCACCTTCGGTGGGCGTCTGGGGCC
CTGGCGCTGGTGGCAAACCTGGACCCGCGCCCAGTGGCTGGTGGCGCTCGGGCTGTGCCCGTTGTTGCTGATATTGGGCC
TGCCGGTGAGTCTCAGCGGGCCGCTGGTAAACCTGTTGGCGGTGCCCTGGATCAGCCTGTTGGTGTTGCCGTTGGCATTG
CTCGGCACGGTATTGCTGTCGGTGCCGTTCATCGGTGAAGCGTTGCTATGGATCGCCGGCGGATTGCTCGATCTGCTGTT
CAAGGGGCTCGCGCTGGTGGCCGGGCGGATGCCGGCCTGGGTCCCCGTTCCGGTCCCCCCGTGGGCGTGGTGCATCGCCG
CGCTCGGTGCTGTCGTGCTGTTACTGCCCAAGGGCGTACCGCTGCGTGTGCTGGGTTGGCCGATGTTGCTGCTGATGGTG
TTCGCGCCACGGGAAGAAGTGCCACCAGGGCGAGCGGAGGTCTGGCAACTGGACGTTGGCCAGGGGCTGGCGGTGCTGGT
GCGCACCCGTCATCACAGCCTGCTCTACGATGCGGGGCCCCGCTTTGGCGATGCCGATGCGGGCGAGCGTGTCGTGCTGC
CGACCTTGCGCAAGCTGAATGTGCAGAAGCTGGACCTGATGCTGCTCAGCCATGCCGATGCCGATCACGCCGGTGGTGCC
CAGGCCGTGCGCAACGGGCTGGCAACGCTGCGAGTGATCAGCGGCGATCCGGCCGCGTTGTCCGTCGCCCTTGGAGCCGA
GGGCTGCGACAGCGGCGAACAGTGGGAATGGGACGGCGTGCGCTTCGAAGTGTGGCAATGGTCATCGGCCCTTGAAAGCA
ACCAGAAATCCTGCGTCCTGCTGGTCGAGGCCAACGGCGAGCGGTTGTTGTTGACTGGCGATATCGATACCCGTGCCGAA
CGGGCCTTGCTCGATGGCCCACTGGCGGTGCCGACCCAGTGGCTGGCCGCGCCCCATCATGGCAGTCGCAGTTCATCGTC
GATGGCGTTGCTGTCGCGCCTCAAGCCGCATTCGGTATTAATCTCCCGAGGCCAAGGCAACGCCTTCGGCCATCCCCATC
CCCAGGTAATGGCCCGGTATCGACGATTGGGCATGGCCATCTACGACAGTGCCGAACAAGGTGCCATTCGTCTGCAACTG
GGGGCCTTCGAGCGGCCGGATTCCCAGGCCGGCCACCGGCGCTATTGGCGCGACCCGCCGCCTGCGGGGCCATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-675)

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.173

96.237

0.589