Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LOY22_RS19025 Genome accession   NZ_CP087179
Coordinates   4191602..4193824 (-) Length   740 a.a.
NCBI ID   WP_258594460.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-035     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4186602..4198824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY22_RS18990 (LOY22_18970) murB 4186993..4188012 (-) 1020 WP_258594452.1 UDP-N-acetylmuramate dehydrogenase -
  LOY22_RS18995 (LOY22_18975) - 4188009..4188473 (-) 465 WP_258594454.1 low molecular weight protein-tyrosine-phosphatase -
  LOY22_RS19000 (LOY22_18980) kdsB 4188473..4189237 (-) 765 WP_093380567.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY22_RS19005 (LOY22_18985) - 4189234..4189419 (-) 186 WP_038994143.1 Trm112 family protein -
  LOY22_RS19010 (LOY22_18990) lpxK 4189458..4190468 (-) 1011 WP_258594457.1 tetraacyldisaccharide 4'-kinase -
  LOY22_RS19015 (LOY22_18995) - 4190468..4190899 (-) 432 WP_045195189.1 biopolymer transporter ExbD -
  LOY22_RS19020 (LOY22_19000) exbB 4190896..4191531 (-) 636 WP_176794233.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY22_RS19025 (LOY22_19005) comA 4191602..4193824 (-) 2223 WP_258594460.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY22_RS19030 (LOY22_19010) - 4193968..4194510 (+) 543 WP_045195193.1 DUF2062 domain-containing protein -
  LOY22_RS19035 (LOY22_19015) - 4194478..4195257 (-) 780 WP_045195195.1 ABC transporter permease -
  LOY22_RS19040 (LOY22_19020) - 4195254..4196186 (-) 933 WP_045195197.1 ABC transporter ATP-binding protein -
  LOY22_RS19045 (LOY22_19025) - 4196341..4196964 (-) 624 WP_258594462.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80896.96 Da        Isoelectric Point: 9.6934

>NTDB_id=627438 LOY22_RS19025 WP_258594460.1 4191602..4193824(-) (comA) [Pseudomonas sp. B21-035]
MRTGMLALALGLLSLGFLPALPPVWILVLLAIAGLCCLPTRLWPAGLFLLGLSWACVSAQWALDERLAVQFDGRTLWIEG
RVTGLPEQGARSVRFELSDAESRRGQLPRRMQLSWFGGPAVNSGEYWRLAVSLKRPAGLLNPHGPDQEASLLARRIGATG
SVKAGERLLPATAAWRDDLRQRLLSVDAQGREAALVALILGDGGALARQDWQALQATGTVHLLVISGQHIGLLAGLVYTL
IAGLARLGWWPQRLPWLPWACALAFAAALAYGLLAGFQVPVQRACMMLAMVLLWRLRFRHLGVGLPLLLALDAVLLWEPL
ASLQPGFWLSFMAVAILIFTFSGRLGAWNPWLAWSRAQWLIAIGLLPVLLAQGLPVSLTAPLINLLAVPWISLAVLPMAL
LGTVLLPVPVLGEGLLWLAGGLLDGLFRLLAHVAVWQPAWMPEPLPFWAWLLVCLGALLVLLPRGIPMRVLGWPLLLLAV
FAPRERVPQGQVEVWQLDVGQGLAFVLRTRHHAMLYDAGPAMGDLDLGERVVLPSLRKLGVSKLDLMLLSHADADHAGGA
RAVQRGLPVLRVQAGEAAALPEVLQAQPCSSGERWQWDGVNFSLWQWQDAGDSNQDSCVLLVEANGEKLLLTGDLDARGE
RAWARGWQATTVDWLQSPHHGSRSSSSEALLKATTPRGVLISRGRYNAFGHPHPEVMARYRTHGIQAYDNVDHGALRLRL
GVFGEPEGLRAQRRFWREPR

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=627438 LOY22_RS19025 WP_258594460.1 4191602..4193824(-) (comA) [Pseudomonas sp. B21-035]
ATGCGCACAGGGATGTTGGCGCTTGCACTCGGGCTGCTCAGCCTCGGGTTCCTGCCGGCTTTGCCGCCCGTCTGGATACT
TGTCCTGCTGGCAATTGCCGGGCTTTGCTGCCTGCCTACGCGGCTGTGGCCCGCCGGGCTGTTTCTGCTGGGCTTGAGCT
GGGCCTGCGTCTCGGCGCAATGGGCGTTGGATGAGCGCCTGGCTGTGCAGTTCGATGGGCGAACCCTGTGGATAGAAGGC
CGGGTTACTGGCTTGCCGGAGCAGGGCGCGCGCTCGGTGAGGTTCGAGTTGAGCGATGCCGAGTCGCGCCGGGGGCAATT
GCCAAGGCGCATGCAGCTCAGCTGGTTTGGCGGCCCGGCGGTCAATAGCGGTGAGTACTGGCGTTTGGCAGTCAGCCTCA
AGCGCCCCGCAGGCTTGCTCAATCCTCACGGCCCGGACCAGGAGGCCAGTTTGTTGGCCCGGCGCATCGGCGCCACCGGC
AGCGTCAAGGCCGGCGAGCGGCTGCTGCCGGCAACGGCGGCCTGGCGGGATGATCTGCGCCAGCGCTTGCTCAGCGTTGA
TGCCCAGGGCCGGGAGGCGGCGCTGGTGGCCTTGATACTCGGCGATGGCGGCGCTTTGGCGCGCCAGGACTGGCAAGCGC
TGCAGGCCACCGGCACGGTGCACTTGCTGGTGATTTCCGGCCAGCATATTGGCCTGTTGGCCGGGCTGGTATACACCTTG
ATTGCCGGGCTGGCGCGCCTGGGCTGGTGGCCGCAACGGCTACCCTGGCTGCCTTGGGCCTGTGCGCTGGCCTTTGCCGC
AGCACTGGCCTATGGCTTGCTGGCCGGGTTTCAGGTGCCGGTGCAGCGCGCCTGCATGATGCTGGCCATGGTGCTGCTCT
GGCGCCTGCGCTTTCGTCACCTGGGTGTCGGGCTGCCGTTGTTGCTGGCGCTCGATGCAGTGCTGCTGTGGGAACCATTG
GCCAGCTTGCAGCCGGGCTTCTGGCTGTCGTTCATGGCCGTGGCCATTCTGATCTTCACCTTCAGCGGTCGCCTTGGCGC
CTGGAACCCCTGGCTGGCCTGGAGTCGCGCCCAGTGGTTGATCGCCATCGGCTTGTTGCCGGTGCTGCTGGCGCAAGGTT
TGCCGGTGAGCCTGACGGCGCCGCTGATCAATCTGCTGGCAGTGCCGTGGATCAGCCTTGCGGTGTTGCCAATGGCGTTG
CTCGGCACTGTGTTGCTGCCGGTGCCGGTTCTGGGGGAAGGCTTGCTGTGGCTTGCCGGCGGCCTGCTCGACGGTTTGTT
TCGCTTGCTGGCGCATGTGGCGGTTTGGCAACCGGCCTGGATGCCAGAACCATTGCCGTTCTGGGCCTGGTTGCTGGTAT
GCCTGGGGGCATTGCTGGTGTTGTTGCCGCGTGGCATACCGATGCGGGTGCTGGGCTGGCCATTGTTGCTGTTGGCGGTG
TTTGCGCCCCGGGAGCGCGTTCCGCAGGGGCAGGTAGAGGTCTGGCAGCTGGATGTCGGCCAGGGGCTGGCCTTTGTGCT
GCGCACCCGGCACCACGCCATGTTGTATGACGCCGGCCCGGCCATGGGCGATCTCGATCTGGGCGAGCGGGTAGTGCTTC
CCAGCTTGCGCAAGCTGGGGGTAAGCAAGCTCGACCTGATGTTGCTCAGCCACGCCGACGCCGATCACGCCGGGGGCGCC
CGCGCCGTGCAGCGCGGGTTGCCGGTGCTGCGGGTGCAGGCTGGTGAGGCTGCGGCCTTGCCTGAAGTGCTGCAAGCGCA
GCCGTGCAGCAGCGGCGAACGCTGGCAGTGGGACGGGGTGAATTTTTCACTGTGGCAGTGGCAGGATGCTGGCGACAGCA
ACCAGGATTCCTGTGTGCTGCTGGTCGAGGCAAACGGCGAAAAACTGCTGCTCACCGGCGATCTCGATGCCCGTGGCGAA
CGGGCCTGGGCGCGGGGCTGGCAGGCGACCACGGTCGACTGGCTGCAATCGCCCCATCACGGCAGTCGCAGCTCCTCCAG
CGAGGCCTTGTTAAAGGCTACTACCCCGCGCGGCGTGCTGATTTCGCGCGGGCGCTACAACGCCTTCGGGCATCCGCACC
CGGAGGTCATGGCGCGCTATCGGACGCATGGTATCCAGGCCTATGACAATGTCGACCACGGTGCCTTGCGCCTGCGCCTG
GGTGTGTTCGGCGAGCCTGAGGGGTTGCGTGCCCAGCGGCGTTTCTGGCGTGAACCGAGATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-680)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.798

98.243

0.597
  comA Ralstonia pseudosolanacearum GMI1000

33.175

100

0.378