Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NDR95_RS20170 Genome accession   NZ_CP104170
Coordinates   4301486..4302700 (-) Length   404 a.a.
NCBI ID   WP_022579875.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain HW001G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4296486..4307700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDR95_RS20165 (NDR95_20165) - 4299794..4300972 (-) 1179 WP_023116094.1 substrate-binding domain-containing protein -
  NDR95_RS20170 (NDR95_20170) pilC 4301486..4302700 (-) 1215 WP_022579875.1 type II secretion system inner membrane protein GspF Machinery gene
  NDR95_RS20175 (NDR95_20175) pilB 4302700..4304109 (-) 1410 WP_119565210.1 type II secretion system ATPase GspE Machinery gene
  NDR95_RS20180 (NDR95_20180) gspD 4304106..4306517 (-) 2412 WP_009315212.1 type II secretion system secretin GspD -
  NDR95_RS20185 (NDR95_20185) - 4306514..4307107 (-) 594 WP_003112724.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 43349.37 Da        Isoelectric Point: 9.3769

>NTDB_id=627424 NDR95_RS20170 WP_022579875.1 4301486..4302700(-) (pilC) [Pseudomonas aeruginosa strain HW001G]
MQTFRYEAADAQGRIETGTLEADSQRGALGQLRARGLTPLEVREQAGGGAGQGAGALFAPRLSDGDLAWATRQLASLLAA
SLPLEAALSATLDQAERKHIAQTLSAVRSDVRGGMRLADALAARPRDFPEIYRALVAAGEESGDLAQVMERLADYIEERN
ALRGKILTAFIYPAVVGVVSIGIVIFLLGYVVPQVVSAFSQARQDLPALTRAMLQASDFVRAWGWLCAGAIGGAYWGWRL
YLRDPQARLGWHRRVLRLPLLGRFVLGVNTARFASTLAILGSAGVPLLRALDAARQTLANDCLAQAVEEATAQVREGVSL
ASALRTRQVFPPILTHLIASGEKTGALPPMLDRAAQTLSRDIERRAMGMTALLEPLMIVVMGGVVLTIVMAVLMPIIEMN
QLVQ

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=627424 NDR95_RS20170 WP_022579875.1 4301486..4302700(-) (pilC) [Pseudomonas aeruginosa strain HW001G]
ATGCAGACCTTCCGCTACGAAGCAGCCGACGCCCAGGGCCGGATCGAGACCGGCACCCTGGAGGCGGACAGCCAGCGTGG
CGCCCTCGGCCAACTGCGCGCCCGCGGCCTGACCCCGCTGGAGGTCCGCGAACAGGCTGGCGGCGGGGCCGGGCAAGGGG
CGGGCGCGCTGTTCGCCCCGCGCCTGTCCGACGGCGACCTGGCCTGGGCCACCCGCCAACTGGCCAGCCTGCTGGCCGCC
AGCCTGCCGCTGGAGGCGGCGCTGAGCGCCACCCTCGACCAGGCTGAGCGCAAGCACATCGCCCAGACCCTGAGCGCCGT
GCGCAGCGACGTGCGCGGCGGCATGCGCCTGGCCGACGCCCTTGCCGCACGGCCGCGGGACTTCCCGGAAATCTACCGGG
CGCTGGTGGCGGCGGGCGAGGAGTCCGGCGACCTGGCCCAGGTGATGGAGCGCCTGGCTGACTACATCGAGGAACGCAAC
GCCCTGCGCGGCAAGATCCTCACCGCGTTCATCTACCCGGCGGTGGTCGGCGTGGTCTCCATCGGCATCGTCATCTTCCT
CCTCGGCTACGTGGTGCCGCAGGTGGTCAGCGCCTTCTCCCAGGCGCGCCAGGACCTGCCGGCGCTGACCCGGGCGATGC
TCCAGGCCAGCGACTTCGTGCGCGCCTGGGGCTGGCTCTGCGCCGGCGCCATCGGTGGCGCTTACTGGGGCTGGCGCTTG
TACCTGCGCGACCCGCAGGCGCGGCTCGGCTGGCACCGGCGAGTGCTGCGCCTGCCTCTGCTCGGACGCTTCGTGCTCGG
GGTGAATACCGCGCGCTTCGCCTCCACCCTGGCGATCCTCGGCAGCGCCGGCGTACCGCTGCTGCGCGCGCTCGATGCGG
CGCGCCAGACGCTGGCCAACGACTGCCTCGCGCAGGCGGTGGAGGAGGCCACCGCGCAGGTTCGCGAAGGTGTCTCGCTG
GCCTCGGCGCTGCGCACGCGGCAGGTGTTCCCGCCGATCCTCACCCACCTGATCGCCAGCGGCGAGAAGACCGGTGCGCT
GCCGCCGATGCTCGACCGCGCGGCGCAGACCTTGTCGCGCGACATCGAGCGCCGCGCCATGGGCATGACCGCGTTGCTCG
AGCCGCTGATGATCGTGGTCATGGGCGGGGTGGTGCTGACCATCGTGATGGCGGTGCTGATGCCGATCATCGAGATGAAC
CAACTGGTCCAGTAG

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)

Type II secretion system (T2SS), protein F (T2SSF)

(71-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Thermus thermophilus HB27

36.386

100

0.364