Detailed information NTG0627175

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LOY26_RS03295
• Genome accession: NZ_CP087169
• Coordinates: 717779..718645 (-)
• Length: 288 a.a.
• NCBI ID: WP_258714387.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-047
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 712779..723645

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY26_RS03260 (LOY26_03260)	-	713461..714756 (-)	1296	WP_033701435.1	NAD(P)/FAD-dependent oxidoreductase	-
LOY26_RS03265 (LOY26_03265)	-	714841..715014 (-)	174	WP_013970765.1	DUF3094 family protein	-
LOY26_RS03270 (LOY26_03270)	-	715147..715776 (-)	630	WP_013970766.1	DUF1780 domain-containing protein	-
LOY26_RS03275 (LOY26_03275)	-	715832..715993 (-)	162	WP_258714385.1	hypothetical protein	-
LOY26_RS03280 (LOY26_03280)	-	716103..716786 (+)	684	WP_258714386.1	energy-coupling factor ABC transporter permease	-
LOY26_RS03285 (LOY26_03285)	yacG	716959..717159 (-)	201	WP_047582821.1	DNA gyrase inhibitor YacG	-
LOY26_RS03290 (LOY26_03290)	coaE	717156..717779 (-)	624	WP_047582819.1	dephospho-CoA kinase	-
LOY26_RS03295 (LOY26_03295)	pilD	717779..718645 (-)	867	WP_258714387.1	A24 family peptidase	Machinery gene
LOY26_RS03300 (LOY26_03300)	-	718648..719856 (-)	1209	WP_186665983.1	type II secretion system F family protein	-
LOY26_RS03305 (LOY26_03305)	-	720074..720484 (+)	411	WP_033701422.1	pilin	-
LOY26_RS03315 (LOY26_03315)	-	720795..722123 (+)	1329	WP_258714388.1	phage integrase central domain-containing protein	-
LOY26_RS03320 (LOY26_03320)	-	723016..723410 (+)	395	Protein_632	integrase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32099.27 Da
• Isoelectric Point: 7.2546

>NTDB_id=627175 LOY26_RS03295 WP_258714387.1 717779..718645(-) (pilD) [Pseudomonas sp. B21-047]
MTLWTFLAMEPVYFITLATVLGLLVGSFLNVVVYRLPIMLERQWQREAHEVLGLPVTEHERFDLCLPASQCTQCGHRIRA
WENIPVLSYLALRGRCSACKQRISVRYPLVEVGCALLSMVVAWRYGASVEALVLLPLTWSLLALSLIDHDQQLLPDAIVL
PGLWLGLIVNYFGVWVPLPDALCGAVVGYLSLWTVYWLFKLVTGKEGMGYGDFKLLALLGAWGGWQVLPLTLLLSSVLGA
LVGVYLLRVRKHSMGTAMPFGPYLAIAGWIAVLWGDEIYASYMQLLGF

Nucleotide

• Length: 867 bp

>NTDB_id=627175 LOY26_RS03295 WP_258714387.1 717779..718645(-) (pilD) [Pseudomonas sp. B21-047]
ATGACTTTATGGACCTTCCTGGCGATGGAGCCGGTTTACTTCATCACCCTGGCGACCGTGCTCGGCCTGTTGGTGGGCAG
TTTTCTCAACGTTGTGGTGTACCGCCTGCCGATCATGCTGGAGCGCCAATGGCAGCGTGAGGCACACGAAGTGCTGGGGC
TGCCGGTGACCGAGCACGAGCGTTTCGACCTGTGCCTGCCGGCCTCGCAGTGCACACAATGCGGGCACCGGATACGGGCG
TGGGAAAACATCCCGGTGCTCAGCTACCTGGCGTTGCGTGGGCGCTGCTCGGCCTGCAAACAGCGCATCAGCGTGCGTTA
CCCGTTGGTCGAGGTGGGTTGTGCGCTGCTGTCGATGGTGGTGGCCTGGCGCTACGGGGCCAGCGTCGAGGCACTGGTGC
TGCTGCCGCTGACCTGGAGCTTGCTGGCCCTGAGCTTGATCGACCATGACCAGCAACTGCTGCCCGATGCCATCGTGCTG
CCGGGGCTGTGGCTTGGGCTGATCGTCAATTACTTCGGGGTATGGGTGCCCTTGCCCGATGCCTTATGCGGCGCGGTGGT
CGGGTACCTCAGCCTGTGGACGGTGTACTGGCTGTTCAAGCTGGTTACCGGCAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTGTTGGCGCTGCTCGGCGCCTGGGGTGGCTGGCAGGTACTGCCGCTGACCTTGTTGCTGTCGTCGGTGCTTGGGGCG
CTGGTTGGGGTGTACCTGCTGCGGGTGCGCAAGCATTCCATGGGTACGGCCATGCCATTTGGGCCCTATCTGGCAATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCTTACATGCAACTGCTTGGATTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.986	95.833	0.517
pilD	Acinetobacter baumannii D1279779	50.357	97.222	0.49
pilD	Acinetobacter nosocomialis M2	49.643	97.222	0.483
pilD	Vibrio campbellii strain DS40M4	50.362	95.833	0.483
pilD	Neisseria gonorrhoeae MS11	50.558	93.403	0.472