Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   LOY56_RS18925 Genome accession   NZ_CP087168
Coordinates   4021385..4023619 (-) Length   744 a.a.
NCBI ID   WP_258616482.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-048     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4016385..4028619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY56_RS18890 (LOY56_18845) murB 4016765..4017784 (-) 1020 WP_258616476.1 UDP-N-acetylmuramate dehydrogenase -
  LOY56_RS18895 (LOY56_18850) - 4017781..4018245 (-) 465 WP_258616477.1 low molecular weight protein-tyrosine-phosphatase -
  LOY56_RS18900 (LOY56_18855) kdsB 4018245..4019009 (-) 765 WP_258616478.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY56_RS18905 (LOY56_18860) - 4019006..4019191 (-) 186 WP_003174668.1 Trm112 family protein -
  LOY56_RS18910 (LOY56_18865) lpxK 4019217..4020227 (-) 1011 WP_258616479.1 tetraacyldisaccharide 4'-kinase -
  LOY56_RS18915 (LOY56_18870) - 4020227..4020655 (-) 429 WP_258616480.1 biopolymer transporter ExbD -
  LOY56_RS18920 (LOY56_18875) exbB 4020652..4021287 (-) 636 WP_258616481.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY56_RS18925 (LOY56_18880) comA 4021385..4023619 (-) 2235 WP_258616482.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY56_RS18930 (LOY56_18885) - 4023756..4024271 (+) 516 WP_258616483.1 DUF2062 domain-containing protein -
  LOY56_RS18935 (LOY56_18890) - 4024316..4025521 (-) 1206 WP_258616484.1 ISL3 family transposase -
  LOY56_RS18940 (LOY56_18895) - 4025685..4026464 (-) 780 WP_258616486.1 ABC transporter permease -
  LOY56_RS18945 (LOY56_18900) - 4026461..4027393 (-) 933 WP_123494600.1 ABC transporter ATP-binding protein -
  LOY56_RS18950 (LOY56_18905) - 4027527..4028150 (-) 624 WP_258616489.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 81670.89 Da        Isoelectric Point: 9.8314

>NTDB_id=627154 LOY56_RS18925 WP_258616482.1 4021385..4023619(-) (comA) [Pseudomonas sp. B21-048]
MRTGMMALALGLLALRFLPALPPAGLWLLLTVVGLMLLPFRTFPLAFLLFGLSWAGANAQWALNDRLALNLDGETRWVEG
RVTGLPQQVEGVVRFELTDNQSRRTRLPRHLRLAWYGGPPVNSGERWRLAVKLKRPAGLLNPHAFDYDAWLLARHIGATG
TVKDGQRLMEAQWAWRDGIRQRLQAVDAQGRTGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHVGLLAGVVYLL
IAGLARYGLWPKRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACLMIGLVLLWRLRFRHLGAWWPLLLAFDGILLLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLVLGLPISLSGPMANLLAVPWISLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIELLFKGLALIAGQLPAWVPVAVPLWVWALGTLGAFVLLLPRGVPLRLLGWPMLLLLV
FPPRHTLPEGMAEVWQLDVGQGLAILVRTRHHTLLYDAGPRFGDIDLGERVVLPSLRKLGVNGLDLMLISHADADHAGGA
RAIASAMPVKQVLSGDHLALPDELHAEGCESGQQWTWDGVTFQLWQWPSASDSNQKSCVLQIEANDERLLLTGDIDAAAE
RALLDGPLAVPTDWLQAPHHGSRSSSSVALLRALQPKAVLISRGNGNSFGHPHPTVVARYQKRGVAIYDSAEQGAIRLQL
GRFEPPWTMLQERRFWRDPPPLSQ

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=627154 LOY56_RS18925 WP_258616482.1 4021385..4023619(-) (comA) [Pseudomonas sp. B21-048]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTCTGCTGGCCCTGCGTTTTTTACCGGCATTACCGCCGGCGGGGTTATG
GCTGTTGCTGACGGTAGTGGGATTGATGTTGCTGCCGTTTCGCACCTTTCCCCTGGCATTTTTGTTGTTCGGTTTGAGTT
GGGCGGGCGCGAATGCGCAGTGGGCGCTGAATGATCGTCTGGCACTGAATCTCGATGGCGAGACTCGCTGGGTCGAAGGT
CGTGTGACCGGGTTGCCGCAACAGGTCGAGGGCGTGGTGCGTTTCGAGCTGACGGACAATCAGTCGCGTCGCACCAGACT
GCCTCGGCACCTGCGCCTGGCCTGGTATGGCGGGCCGCCCGTGAACAGCGGCGAGCGTTGGCGACTGGCGGTCAAATTGA
AGCGTCCTGCCGGATTGCTCAATCCGCATGCGTTCGATTACGACGCCTGGTTACTGGCCCGGCACATCGGCGCCACCGGG
ACCGTCAAAGATGGCCAACGACTGATGGAAGCACAGTGGGCCTGGCGCGACGGCATCCGTCAGCGCTTGCAGGCCGTGGA
TGCCCAAGGGCGAACGGGAGCGCTGACGGCGTTGGTGCTGGGGGATGGCGCCGGGCTCAGTCGTGAGGACTGGCAGGTGC
TGCAAGACACCGGCACCGTGCATTTGTTGGTGATTTCCGGGCAGCACGTTGGTTTGCTGGCGGGAGTGGTGTATCTGCTG
ATTGCCGGATTGGCGCGTTACGGCTTATGGCCCAAGCGCTTACCGTGGTTGCCATGGGCGTGCGGACTGGCGTTCGCGGC
GGCGCTCGGTTACGGGCTACTAGCCGGCTTTGAGGTGCCGGTGCGGCGGGCCTGCCTGATGATCGGTCTGGTGCTGTTGT
GGCGGCTACGATTTCGTCATCTTGGCGCGTGGTGGCCGCTGTTGCTGGCGTTTGATGGCATTCTGCTGCTGGACCCGCTG
GCGAGCCTGCAACCAGGTTTCTGGTTGTCCTTCGCGGCGGTGGCGGTGCTGATTTTCACCTTTGGCGGGCGATTGGGGCC
GTGGCGTTGGTGGCAAACCTGGACTCGCGCCCAATGGCTGATCGCGATCGGTCTGTGTCCGCTGCTGTTGGTGCTGGGGT
TGCCGATCAGTCTCAGCGGGCCAATGGCTAATTTACTGGCGGTGCCCTGGATCAGTCTGGTGGTGCTGCCGCCGGCCTTG
CTCGGGACGCTGTTGTTGCCCGTTCCTTATGTGGGTGAAGGGTTGCTGTGGTTGGCCGGCGGTCTGATCGAACTTTTGTT
CAAGGGGTTGGCGTTGATCGCCGGGCAATTGCCCGCGTGGGTGCCGGTGGCGGTGCCGTTGTGGGTATGGGCGCTCGGCA
CGCTGGGGGCCTTTGTGCTGTTATTGCCGCGAGGCGTGCCGTTGCGCCTGTTGGGCTGGCCGATGTTGCTTTTGCTGGTT
TTTCCGCCCCGGCACACGTTGCCTGAAGGCATGGCCGAGGTCTGGCAGCTGGATGTCGGTCAGGGGTTGGCCATCCTGGT
GCGCACTCGCCATCACACCTTGCTGTATGACGCCGGGCCACGGTTTGGCGATATTGATCTGGGTGAGCGGGTGGTGCTGC
CGTCATTGCGCAAACTGGGGGTGAACGGGCTCGATCTGATGCTGATCAGCCATGCCGATGCCGATCACGCCGGTGGTGCG
CGAGCGATTGCCAGCGCAATGCCAGTGAAGCAAGTATTGAGTGGCGATCACTTGGCCCTGCCAGACGAGTTACACGCCGA
GGGCTGCGAGAGCGGTCAGCAATGGACCTGGGACGGGGTAACGTTTCAACTCTGGCAGTGGCCGTCTGCCAGCGACAGCA
ATCAAAAATCCTGCGTGTTGCAGATTGAAGCCAATGACGAGCGGTTGCTGCTGACCGGCGACATCGATGCTGCCGCCGAG
CGGGCGCTGCTCGACGGTCCATTGGCGGTGCCGACGGATTGGTTGCAAGCCCCGCACCATGGCAGTCGCAGTTCGTCTTC
GGTGGCGTTGCTCCGCGCCTTGCAACCCAAAGCAGTGCTGATCTCCCGTGGCAACGGCAATTCTTTCGGCCATCCCCATC
CCACGGTGGTGGCGCGCTATCAAAAGCGCGGTGTGGCGATTTACGACAGCGCCGAGCAAGGTGCCATTCGTCTGCAACTG
GGACGCTTCGAGCCGCCGTGGACGATGCTTCAAGAACGGCGTTTCTGGCGCGATCCGCCACCCTTGAGCCAGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

64.395

96.64

0.622