Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   LOY56_RS18920 Genome accession   NZ_CP087168
Coordinates   4020652..4021287 (-) Length   211 a.a.
NCBI ID   WP_258616481.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-048     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4015652..4026287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY56_RS18885 (LOY56_18840) - 4015996..4016469 (-) 474 WP_258616475.1 (2Fe-2S)-binding protein -
  LOY56_RS18890 (LOY56_18845) murB 4016765..4017784 (-) 1020 WP_258616476.1 UDP-N-acetylmuramate dehydrogenase -
  LOY56_RS18895 (LOY56_18850) - 4017781..4018245 (-) 465 WP_258616477.1 low molecular weight protein-tyrosine-phosphatase -
  LOY56_RS18900 (LOY56_18855) kdsB 4018245..4019009 (-) 765 WP_258616478.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LOY56_RS18905 (LOY56_18860) - 4019006..4019191 (-) 186 WP_003174668.1 Trm112 family protein -
  LOY56_RS18910 (LOY56_18865) lpxK 4019217..4020227 (-) 1011 WP_258616479.1 tetraacyldisaccharide 4'-kinase -
  LOY56_RS18915 (LOY56_18870) - 4020227..4020655 (-) 429 WP_258616480.1 biopolymer transporter ExbD -
  LOY56_RS18920 (LOY56_18875) exbB 4020652..4021287 (-) 636 WP_258616481.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  LOY56_RS18925 (LOY56_18880) comA 4021385..4023619 (-) 2235 WP_258616482.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LOY56_RS18930 (LOY56_18885) - 4023756..4024271 (+) 516 WP_258616483.1 DUF2062 domain-containing protein -
  LOY56_RS18935 (LOY56_18890) - 4024316..4025521 (-) 1206 WP_258616484.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22955.16 Da        Isoelectric Point: 6.8771

>NTDB_id=627153 LOY56_RS18920 WP_258616481.1 4020652..4021287(-) (exbB) [Pseudomonas sp. B21-048]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNATVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=627153 LOY56_RS18920 WP_258616481.1 4020652..4021287(-) (exbB) [Pseudomonas sp. B21-048]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGTCTCTGGACCCTGCGTGCCAGCCGTGTGACCCCGGAGCACTTGCTCGGTCAGGTCTGGGTCTGGATCAAGGACA
AACAACTCAATAAAGAAAAACTCAAGGAACTGCGCGCCAACTCTCCGTTGGGCGAGATCCTGGCCGCCGGTCTGGCGAAC
TCCAGGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAAGCCGCAGCGCGGGTGATTCATGAGCTCGAACGCTATAT
CAATGCCCTCGGCACCATTGCCGCCATGGCCCCGTTGCTGGGTTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTGCGTTCATGGGCACGGGCATGGGCACCAACGCCACCGTGCTGGCCGGGGGTATTTCCAAGGCGCTGATCACCACCGCC
GCAGGTCTGATGGTCGGCATCCCAGCCGTGTTCTTCCACCGCTTTCTGCAACGCCGGATCGATGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAATTGGTCGAGGTGGTACAGGGCGACCGCGACGTGGACCTGGCCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853