Detailed information NTG0627123

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: LOY49_RS19055
• Genome accession: NZ_CP087167
• Coordinates: 4275871..4278105 (-)
• Length: 744 a.a.
• NCBI ID: WP_258603331.1
• Uniprot ID: -
• Organism: Pseudomonas atacamensis strain B21-050
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4270871..4283105

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY49_RS19020 (LOY49_18990)	murB	4271249..4272268 (-)	1020	WP_258603328.1	UDP-N-acetylmuramate dehydrogenase	-
LOY49_RS19025 (LOY49_18995)	-	4272265..4272729 (-)	465	WP_076563814.1	low molecular weight protein-tyrosine-phosphatase	-
LOY49_RS19030 (LOY49_19000)	kdsB	4272729..4273493 (-)	765	WP_071173223.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
LOY49_RS19035 (LOY49_19005)	-	4273490..4273675 (-)	186	WP_003179363.1	Trm112 family protein	-
LOY49_RS19040 (LOY49_19010)	lpxK	4273699..4274709 (-)	1011	WP_258603330.1	tetraacyldisaccharide 4'-kinase	-
LOY49_RS19045 (LOY49_19015)	-	4274709..4275137 (-)	429	WP_016771006.1	biopolymer transporter ExbD	-
LOY49_RS19050 (LOY49_19020)	exbB	4275134..4275769 (-)	636	WP_016771007.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
LOY49_RS19055 (LOY49_19025)	comA	4275871..4278105 (-)	2235	WP_258603331.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
LOY49_RS19060 (LOY49_19030)	-	4278242..4278760 (+)	519	WP_016770668.1	DUF2062 domain-containing protein	-
LOY49_RS19065 (LOY49_19035)	-	4278912..4279691 (-)	780	WP_056788203.1	ABC transporter permease	-
LOY49_RS19070 (LOY49_19040)	-	4279688..4280620 (-)	933	WP_016771010.1	ABC transporter ATP-binding protein	-
LOY49_RS19075 (LOY49_19045)	-	4280754..4281377 (-)	624	WP_024013937.1	glutathione S-transferase family protein	-
LOY49_RS19080 (LOY49_19050)	-	4281421..4282080 (-)	660	WP_258603332.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81655.84 Da
• Isoelectric Point: 9.9760

>NTDB_id=627123 LOY49_RS19055 WP_258603331.1 4275871..4278105(-) (comA) [Pseudomonas atacamensis strain B21-050]
MRTGMMALAVGLLAPVFLPALPPVGLLVLLPVAALMLLPFRSYPLAFLLFGFTWACVGAQWALNDRLPPSLDGETRWLEG
RVVGLPQHSDGVVRFELADARSRHEKLPSLLRLAWYAGPPVNGGERWRLAVKLKRPGGLLNPDAFDYKAWLLAQRIGATG
TIKDGQRLAEARHAWRDGVRQRLLAADAQGREGALAALVLGDGSGLSREDWQVLQDTGTVHLLVISGQHIGLLAAVMYLL
VAGLARFGIWPLRWPWLPWACGLAFTAALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLFDPL
ASLRPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALSLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGALIDWLFIGLALIAGQWPAWIPAAIPFWALVPGSLGAILLLLPRGVPMRPLGWPLLLLLA
LPPQERIEEGRADVWQLDVGQGLAILIRTRHHALLYDAGPRFGEFDLGERVVLPALRKLNVQALDLMLLSHADADHAGGA
LAVMRGLRVQRVVSGDPPNLPPELSAEACASGEQWQWDGVQFQLWQWSAADDSNQRSCVLQIEANGERLLLTGDIDIRAE
RVLLDSPLAVPTQWLQSPHHGSRSSSSMALLKALQPEAVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEQGAIHLQL
GSFKPPWTMRQQRRFWRDPPVAGR

Nucleotide

• Length: 2235 bp

>NTDB_id=627123 LOY49_RS19055 WP_258603331.1 4275871..4278105(-) (comA) [Pseudomonas atacamensis strain B21-050]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTTTGCCGGCCTTGCCGCCGGTCGGTTTATT
GGTGCTGCTGCCGGTGGCGGCGTTGATGTTGCTGCCGTTTCGCAGCTATCCATTGGCATTTTTGCTGTTTGGCTTTACCT
GGGCCTGCGTTGGCGCGCAGTGGGCGCTAAATGACCGCTTGCCACCGAGCCTGGACGGCGAAACCCGTTGGCTCGAAGGG
CGCGTGGTCGGTCTGCCACAACACAGTGATGGCGTGGTGCGTTTCGAACTGGCTGATGCGCGTTCGCGCCACGAAAAGTT
GCCATCGCTGCTACGCCTGGCCTGGTACGCCGGGCCGCCGGTCAATGGTGGTGAGCGTTGGCGTCTGGCGGTGAAGTTGA
AGCGCCCGGGTGGCCTGCTCAACCCGGATGCCTTCGATTACAAGGCCTGGCTGCTGGCGCAACGGATCGGTGCGACCGGC
ACGATCAAGGATGGCCAGCGCCTGGCTGAGGCCCGGCATGCATGGCGCGACGGCGTTCGCCAGCGCCTGCTGGCGGCCGA
TGCGCAAGGACGAGAGGGCGCGCTGGCGGCGCTGGTGCTTGGTGACGGTTCAGGCCTCAGTCGCGAGGATTGGCAGGTGC
TGCAAGACACCGGCACCGTGCATTTGCTGGTGATCTCCGGCCAGCACATCGGCTTGCTCGCCGCAGTGATGTATCTGCTG
GTCGCCGGGCTGGCGCGTTTCGGAATCTGGCCGTTGCGCTGGCCATGGTTGCCGTGGGCGTGCGGCCTGGCCTTCACGGC
GGCGCTGGGTTACGGCCTGCTCGCCGGTTTCGATGTGCCAGTGCAGCGCGCCTGCGTGATGGTGGCGCTGGTGCTGCTGT
GGCGCCTGCGTTTTCGCCATCTTGGTGCGTGGTGGCCGTTATTGCTGGCGTTCAATGGCGTGCTGCTGTTTGATCCACTG
GCCAGTTTGCGTCCCGGCTTCTGGCTGTCCTTCGCGGCGGTGGCAGTGTTGATCTTCACTTTCGGCGGGCGGCTGGGGGC
GTGGCGCTGGTGGCAGACCTGGACCCGCGCGCAGTGGCTGATCGCAATCGGCTTGTGTCCGGTGTTGCTGGCGCTGAGCT
TGCCGATCAGCGTCAGCGGGCCTGTAGCCAATCTGCTGGCCGTTCCGTGGGTCAGCCTCGTGGTGCTGCCGCCGGCATTG
CTCGGCACGCTATTGCTGCCCGTGCCTTATGTTGGCGAAGGGCTGTTGTGGCTGGCCGGTGCTTTGATCGACTGGCTGTT
TATCGGGCTGGCGCTGATTGCCGGGCAATGGCCGGCGTGGATACCGGCCGCCATTCCATTTTGGGCTTTGGTCCCGGGCA
GCCTTGGCGCGATTTTATTGCTGTTGCCCCGAGGCGTGCCAATGCGTCCATTGGGCTGGCCGCTGCTGTTGCTCCTGGCA
TTGCCGCCTCAAGAGCGAATAGAAGAAGGGCGGGCCGATGTCTGGCAACTCGACGTCGGCCAAGGCCTGGCCATCCTCAT
CCGCACCCGCCATCACGCGCTGCTCTATGACGCCGGCCCGCGTTTCGGCGAGTTCGATCTCGGCGAGCGGGTGGTGCTGC
CAGCGTTACGTAAACTCAATGTGCAAGCGCTCGACTTGATGCTGCTCAGCCACGCTGACGCCGATCACGCTGGCGGTGCT
CTGGCGGTGATGCGGGGATTGAGGGTGCAGCGCGTTGTCAGCGGCGATCCGCCAAACCTGCCGCCCGAGTTGAGCGCCGA
AGCCTGCGCGAGTGGCGAACAGTGGCAGTGGGACGGCGTGCAGTTCCAGCTCTGGCAATGGTCGGCAGCCGATGACAGCA
ACCAGCGCTCCTGTGTCTTGCAGATCGAGGCCAACGGCGAACGCCTGCTGCTCACCGGCGACATCGACATTCGCGCCGAG
CGTGTCCTGCTCGACAGCCCGCTGGCCGTGCCGACGCAGTGGCTGCAATCGCCCCATCACGGCAGCCGCAGTTCATCATC
GATGGCCCTGCTCAAAGCCTTGCAGCCCGAAGCGGTGCTGATCTCCCGTGGCCACGGCAACTCCTTCGGTCATCCTCATC
CAACCGTGCTGGCGCGCTACCGCAAGCAAGGTCTGCGCATCTACGACAGCGCCGAGCAAGGCGCCATTCATCTGCAGCTG
GGTAGCTTCAAGCCGCCCTGGACGATGCGTCAACAGCGGCGTTTCTGGCGCGATCCACCGGTGGCTGGCCGTTGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Domain of unknown function (DUF4131) (DUF4131) (24-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.031	96.64	0.599
comA	Ralstonia pseudosolanacearum GMI1000	35.604	100	0.372