Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LOY52_RS22915 Genome accession   NZ_CP087166
Coordinates   5095090..5096679 (+) Length   529 a.a.
NCBI ID   WP_258680029.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-051     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5090090..5101679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY52_RS22895 (LOY52_22865) pgeF 5091885..5092607 (-) 723 WP_258676057.1 peptidoglycan editing factor PgeF -
  LOY52_RS22900 (LOY52_22870) rluD 5092604..5093566 (-) 963 WP_007963852.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY52_RS22905 (LOY52_22875) - 5093718..5094740 (+) 1023 WP_123588157.1 outer membrane protein assembly factor BamD -
  LOY52_RS22910 (LOY52_22880) - 5094867..5095100 (+) 234 WP_007963850.1 PP0621 family protein -
  LOY52_RS22915 (LOY52_22885) pilS 5095090..5096679 (+) 1590 WP_258680029.1 PAS domain-containing sensor histidine kinase Regulator
  LOY52_RS22920 (LOY52_22890) pilR 5096676..5098022 (+) 1347 WP_258676058.1 sigma-54 dependent transcriptional regulator Regulator
  LOY52_RS22925 (LOY52_22895) thiO 5098111..5099211 (-) 1101 WP_258676059.1 glycine oxidase ThiO -
  LOY52_RS22930 (LOY52_22900) - 5099269..5099670 (-) 402 WP_258676060.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58427.23 Da        Isoelectric Point: 6.7385

>NTDB_id=627100 LOY52_RS22915 WP_258680029.1 5095090..5096679(+) (pilS) [Pseudomonas sp. B21-051]
MIAEAANADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSADDDLLRSGSWLYLVLNILLVVFLENTRRPAQLF
SLALVDVLLLCGLFYAAGGVASAIGNLLIVSVAIANTLLRRRIGLLIAAIGALGIVVSSFLLGFSHPLSANDYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVGLEALNALILQRMRTGILVLDEQRRVQLANHSAKNLLAQSHLEGHLID
DYSPALVERLQLWLSNPTLRPQSLKIPGNGLELQPNFIALAQSPNQQTLIFLEDLAQVAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEHFVAESREQATVR
QTIHLRINSGDFITLMDPDQLTQILDNLLRNGWRHSALLHEQAEVWLALFVDPDSQLAVLEVQDNGPGVPPDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=627100 LOY52_RS22915 WP_258680029.1 5095090..5096679(+) (pilS) [Pseudomonas sp. B21-051]
GTGATCGCTGAGGCCGCCAACGCCGACAGTAAACAGGCGCAGCGTCTGCTGCGCCTTTATCACCTCTACCGTTTAAGCGT
CGGCATCACCCTGGTGTTGCTGATTTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCGACGACGACCTTCTGCGCA
GCGGCAGCTGGTTGTATCTGGTGCTGAACATTCTGCTGGTGGTGTTCCTGGAGAACACCCGCCGCCCGGCGCAGCTGTTC
AGCCTGGCGCTGGTCGATGTGCTGCTGCTGTGCGGTCTGTTCTACGCGGCGGGCGGCGTCGCCAGCGCCATCGGCAACCT
GCTGATTGTCTCGGTGGCGATCGCCAATACCCTGCTGCGCCGACGCATCGGCCTGCTGATTGCCGCCATCGGCGCGCTCG
GCATTGTCGTTTCCAGTTTCCTGCTGGGTTTCAGCCATCCCCTGAGCGCCAATGATTACCTGCAAGCCGGGACCCTCGGC
GCTTTGTGTTTTGCCGCATCGCTGCTGGTCCAGGGCCTGATCCGGCGTCTGGAAGTCAGCGAGACCCTCGCCGAACAGCG
CGCCAGCGAGGTGGTCGGCCTCGAGGCCCTCAACGCCCTGATTCTGCAGCGCATGCGCACCGGCATCCTCGTGCTCGACG
AACAGCGCCGGGTGCAACTGGCCAATCACAGCGCGAAAAACCTGCTGGCGCAGTCGCACCTTGAGGGGCATTTGATCGAT
GACTACTCGCCGGCACTGGTCGAGCGCCTGCAACTGTGGCTGAGTAACCCGACCCTGCGCCCGCAGAGCCTGAAGATTCC
CGGCAATGGTCTGGAGCTGCAACCGAACTTCATCGCCCTCGCACAGAGCCCGAACCAGCAGACCCTGATATTTCTCGAAG
ACCTCGCGCAAGTCGCCCAGCAAGCCCAGCAACTCAAGCTCGCCGCACTCGGGCGCCTGACCGCCGGCATCGCCCATGAA
ATCCGTAACCCGCTGGGCGCCATCAGTCATGCCGCGCAGCTATTGGCGGAGTCCGAGGAACTCGATAGCGCGGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCGCGCCGCCAGC
AGAGCGCTCCGCAACGCCTGGATCTCAAACCGTGGCTGGAACACTTTGTTGCCGAGAGCCGCGAACAGGCCACTGTGCGG
CAAACGATTCATTTGCGGATCAATTCCGGGGACTTCATCACGCTGATGGACCCCGACCAGCTCACGCAGATTCTCGACAA
TCTGTTACGCAACGGCTGGCGGCACAGCGCCCTGTTGCATGAGCAGGCCGAGGTCTGGCTGGCGCTGTTCGTCGACCCCG
ACAGCCAGCTCGCGGTGCTCGAAGTACAGGACAACGGCCCCGGTGTGCCGCCCGATCAGCAGGCGCATCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAAGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCGCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60

100

0.601