Detailed information NTG0627027

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LMH93_RS03555
• Genome accession: NZ_CP087160
• Coordinates: 780761..781627 (-)
• Length: 288 a.a.
• NCBI ID: WP_003247536.1
• Uniprot ID: -
• Organism: Pseudomonas sp. CIP-10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 775761..786627

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LMH93_RS03520 (LMH93_03520)	-	776157..777452 (-)	1296	WP_003247549.1	NAD(P)/FAD-dependent oxidoreductase	-
LMH93_RS03525 (LMH93_03525)	-	777537..777710 (-)	174	WP_003247547.1	DUF3094 family protein	-
LMH93_RS03530 (LMH93_03530)	-	777843..778472 (-)	630	WP_003247546.1	DUF1780 domain-containing protein	-
LMH93_RS03535 (LMH93_03535)	-	778528..778959 (-)	432	WP_060538607.1	hypothetical protein	-
LMH93_RS03540 (LMH93_03540)	-	779046..779753 (+)	708	WP_182375514.1	energy-coupling factor ABC transporter permease	-
LMH93_RS03545 (LMH93_03545)	yacG	779941..780141 (-)	201	WP_003247540.1	DNA gyrase inhibitor YacG	-
LMH93_RS03550 (LMH93_03550)	coaE	780138..780761 (-)	624	WP_003247538.1	dephospho-CoA kinase	-
LMH93_RS03555 (LMH93_03555)	pilD	780761..781627 (-)	867	WP_003247536.1	A24 family peptidase	Machinery gene
LMH93_RS03560 (LMH93_03560)	-	781630..782838 (-)	1209	WP_161774655.1	type II secretion system F family protein	-
LMH93_RS03565 (LMH93_03565)	-	783055..783465 (+)	411	WP_012051131.1	pilin	-
LMH93_RS03575 (LMH93_03575)	-	784140..785541 (+)	1402	Protein_678	PAAR domain-containing protein	-
LMH93_RS03580 (LMH93_03580)	-	785534..785923 (+)	390	WP_003247529.1	hypothetical protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31808.87 Da
• Isoelectric Point: 7.9101

>NTDB_id=627027 LMH93_RS03555 WP_003247536.1 780761..781627(-) (pilD) [Pseudomonas sp. CIP-10]
MTLWALLAEQPAYFLTLATVLGLLVGSFINVLVYRLPIMLERQWQREAQEVLGLPTTQHPRFDLCLPASRCPHCAHRIRA
WENIPVISYLALGGRCSSCKNRISLRYPVVEVASALLSLVVAWRFGASVEALLALPLTWCLLALSLIDADHQLLPDVLVL
PTMWLGLIVNAFGIHVPLADALWGAVAGYLSLWTVYWVFRLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGLCLLRFRRHALGTAIPFGPYLAIAGWIAVLWGDEIYASYIQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=627027 LMH93_RS03555 WP_003247536.1 780761..781627(-) (pilD) [Pseudomonas sp. CIP-10]
ATGACTTTATGGGCTTTGCTGGCTGAACAGCCAGCGTATTTCCTCACCCTTGCCACGGTGCTCGGCCTGCTGGTGGGCAG
CTTTATCAACGTGCTGGTGTATCGCCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCGCAAGAGGTATTGGGGC
TGCCGACCACGCAGCACCCGCGTTTCGACCTGTGCCTGCCGGCCTCCCGGTGCCCACACTGCGCGCACCGGATTCGTGCG
TGGGAGAACATTCCGGTCATCAGCTACCTGGCCTTGGGCGGGCGCTGTTCGTCCTGCAAAAACCGCATCAGCCTGCGTTA
CCCGGTAGTGGAAGTGGCCAGCGCGCTGCTGTCGCTGGTAGTGGCCTGGCGCTTCGGCGCTTCGGTAGAGGCGTTGCTGG
CGTTGCCGCTGACCTGGTGCCTGCTGGCGCTGAGCCTGATCGATGCGGACCACCAGCTGCTGCCGGATGTGCTGGTGCTG
CCGACCATGTGGCTAGGGCTGATCGTCAATGCCTTTGGCATCCATGTGCCCCTGGCCGACGCACTGTGGGGCGCAGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAGGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCA
AGCTGATGGCGCTGATCGGGGCGTGGGGGGGTTGGCAGGTGCTGCCGTTGACGCTGCTGTTGTCGTCGGTGGTGGGGGCA
CTTGTTGGCCTGTGCTTGCTGCGTTTTCGCCGGCATGCCTTGGGCACGGCTATCCCGTTTGGCCCTTATCTGGCAATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCATACATACAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.986	96.181	0.5
pilD	Acinetobacter baumannii D1279779	49.11	97.569	0.479
pilD	Acinetobacter nosocomialis M2	48.399	97.569	0.472
pilD	Vibrio campbellii strain DS40M4	49.091	95.486	0.469
pilD	Neisseria gonorrhoeae MS11	48.327	93.403	0.451