Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LOK79_RS16670 Genome accession   NZ_CP087137
Coordinates   3373260..3373949 (-) Length   229 a.a.
NCBI ID   WP_196479391.1    Uniprot ID   -
Organism   Bacillus velezensis strain JIN4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3368260..3378949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOK79_RS16635 (LOK79_16635) fliW 3368351..3368782 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  LOK79_RS16640 (LOK79_16640) - 3368812..3369381 (-) 570 WP_024085861.1 DUF6470 family protein -
  LOK79_RS16645 (LOK79_16645) flgL 3369472..3370389 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  LOK79_RS16650 (LOK79_16650) flgK 3370401..3371918 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  LOK79_RS16655 (LOK79_16655) - 3371934..3372416 (-) 483 WP_058906392.1 flagellar protein FlgN -
  LOK79_RS16660 (LOK79_16660) flgM 3372431..3372697 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LOK79_RS16665 (LOK79_16665) - 3372767..3373186 (-) 420 WP_058906393.1 TIGR03826 family flagellar region protein -
  LOK79_RS16670 (LOK79_16670) comFC 3373260..3373949 (-) 690 WP_196479391.1 ComF family protein Machinery gene
  LOK79_RS16675 (LOK79_16675) - 3373955..3374239 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  LOK79_RS16680 (LOK79_16680) comFA 3374297..3375682 (-) 1386 WP_058906395.1 DEAD/DEAH box helicase Machinery gene
  LOK79_RS16685 (LOK79_16685) - 3375790..3376638 (-) 849 WP_058906396.1 DegV family protein -
  LOK79_RS16690 (LOK79_16690) degU 3376736..3377425 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LOK79_RS16695 (LOK79_16695) degS 3377502..3378665 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25317.99 Da        Isoelectric Point: 8.2933

>NTDB_id=626890 LOK79_RS16670 WP_196479391.1 3373260..3373949(-) (comFC) [Bacillus velezensis strain JIN4]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTERRFLLWQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=626890 LOK79_RS16670 WP_196479391.1 3373260..3373949(-) (comFC) [Bacillus velezensis strain JIN4]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAGGCGCTTTTTGCTGTGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGCGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGTTTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598