Detailed information NTG0626797

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: N1F80_RS03180
• Genome accession: NZ_CP104076
• Coordinates: 671258..672430 (+)
• Length: 390 a.a.
• NCBI ID: WP_004916965.1
• Uniprot ID: -
• Organism: Riemerella anatipestifer strain SCVM0004
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 666258..677430

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N1F80_RS03150 (N1F80_03150)	folK	667019..667468 (-)	450	WP_004916980.1	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	-
N1F80_RS03155 (N1F80_03155)	sppA	667490..669244 (+)	1755	WP_004916979.1	signal peptide peptidase SppA	-
N1F80_RS03160 (N1F80_03160)	dtd	669329..669775 (-)	447	WP_004916976.1	D-aminoacyl-tRNA deacylase	-
N1F80_RS03165 (N1F80_03165)	-	669781..670245 (-)	465	WP_004916974.1	hypothetical protein	-
N1F80_RS03170 (N1F80_03170)	greA	670348..670815 (+)	468	WP_004916971.1	transcription elongation factor GreA	-
N1F80_RS03175 (N1F80_03175)	-	670834..671220 (+)	387	WP_004916969.1	HIT family protein	-
N1F80_RS03180 (N1F80_03180)	clpX	671258..672430 (+)	1173	WP_004916965.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
N1F80_RS03185 (N1F80_03185)	-	672514..672879 (+)	366	WP_004916962.1	hypothetical protein	-
N1F80_RS03190 (N1F80_03190)	-	672927..674468 (+)	1542	WP_004916959.1	T9SS type A sorting domain-containing protein	-
N1F80_RS03195 (N1F80_03195)	-	674480..674731 (+)	252	WP_004916956.1	hypothetical protein	-
N1F80_RS03200 (N1F80_03200)	-	674793..676064 (+)	1272	WP_228481888.1	peroxiredoxin	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 43885.55 Da
• Isoelectric Point: 6.2755

>NTDB_id=626797 N1F80_RS03180 WP_004916965.1 671258..672430(+) (clpX) [Riemerella anatipestifer strain SCVM0004]
MNNNQCSFCGRHRKEVQMLVSGQNGLICEHCIEQAHAFVKDNIQKEEFSPISTLSELKKPREIKKTLDEYVIGQDQAKKQ
LSIAVYNHYKRLLHSSTKKDNDVEIEKSNIIMIGETGTGKTLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRL
LMVADYDVEKAEKGIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKYIQVNTQNILF
IAGGAFDGIKEIIERRLNKQAIGFSKEKLDSEKDLAQILPQVNSTDLRKFGLIPELLGRFPVITYLDQLTKKTMVRIMKE
PKNSIVNQFKALFKIDGIDLEFTDEALEKIVDETFEKGLGARGLRGTTEKVLEDYMFDIDIISKNKITIN

Nucleotide

• Length: 1173 bp

>NTDB_id=626797 N1F80_RS03180 WP_004916965.1 671258..672430(+) (clpX) [Riemerella anatipestifer strain SCVM0004]
ATGAATAATAACCAGTGTTCTTTTTGCGGAAGACATCGTAAAGAAGTTCAAATGTTAGTTTCGGGACAAAACGGACTTAT
CTGCGAACATTGTATAGAACAAGCTCACGCATTTGTTAAAGACAATATTCAGAAAGAAGAATTCTCTCCTATAAGTACCC
TCTCCGAACTAAAGAAACCTAGAGAAATTAAAAAAACTCTAGACGAATATGTCATCGGACAAGACCAAGCTAAAAAACAA
CTTTCCATCGCAGTCTATAACCATTATAAAAGACTTCTTCACTCTTCAACAAAAAAAGACAATGATGTTGAAATAGAAAA
ATCTAACATCATTATGATAGGTGAAACAGGCACAGGAAAAACCCTTTTAGCGAAAACCATTGCAAGAGAACTTAATGTCC
CTTTTTGTATTGTAGACGCTACTATACTTACCGAAGCTGGTTATGTAGGCGAAGATGTAGAGAGTATTTTATCTAGACTT
CTTATGGTCGCTGATTACGATGTAGAGAAAGCCGAAAAAGGCATTGTATTCATAGATGAAATAGATAAAATAGCGAGAAA
ATCAGATAATCCAAGCATCACAAGAGATGTATCAGGAGAAGGTGTACAACAAGGATTATTAAAGTTATTGGAAGGAAGCA
TTGTAAATGTACCGCCTCAAGGAGGAAGAAAACACCCTGACCAAAAATACATACAAGTAAACACACAAAATATCCTATTC
ATTGCTGGAGGGGCTTTTGATGGTATAAAAGAAATTATAGAAAGGAGACTAAACAAACAAGCCATAGGCTTTAGTAAAGA
AAAACTAGATTCCGAAAAAGATTTGGCACAGATATTGCCACAAGTAAACTCAACGGATTTGAGAAAGTTCGGATTAATTC
CAGAACTTTTAGGTAGATTCCCTGTAATTACTTATTTAGACCAACTAACCAAAAAGACCATGGTAAGAATAATGAAAGAG
CCAAAAAACTCTATTGTTAATCAATTCAAAGCTCTTTTCAAAATAGACGGTATAGATTTAGAGTTCACAGACGAAGCCTT
AGAGAAAATTGTAGATGAAACTTTTGAAAAAGGATTAGGTGCAAGAGGACTTAGAGGCACTACAGAAAAGGTTTTAGAAG
ATTACATGTTTGATATAGATATAATATCCAAGAATAAAATTACAATAAATTAA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (5-40)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (309-378)

• AAA domain (Cdc48 subfamily) (AAA_2) (106-303)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	52.785	96.667	0.51
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	51.715	97.179	0.503