Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N1F80_RS01205 Genome accession   NZ_CP104076
Coordinates   265443..266051 (+) Length   202 a.a.
NCBI ID   WP_064964524.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain SCVM0004     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 260443..271051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N1F80_RS01200 (N1F80_01200) - 260607..265013 (+) 4407 WP_260061692.1 S8 family serine peptidase -
  N1F80_RS01205 (N1F80_01205) recR 265443..266051 (+) 609 WP_064964524.1 recombination mediator RecR Machinery gene
  N1F80_RS01210 (N1F80_01210) - 266058..266915 (+) 858 WP_064964523.1 glycosyltransferase family 2 protein -
  N1F80_RS01215 (N1F80_01215) secG 266954..267316 (-) 363 WP_004919074.1 preprotein translocase subunit SecG -
  N1F80_RS01220 (N1F80_01220) - 267459..269501 (-) 2043 WP_004919073.1 pitrilysin family protein -
  N1F80_RS01225 (N1F80_01225) - 269514..270827 (-) 1314 WP_004919072.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22426.73 Da        Isoelectric Point: 4.9948

>NTDB_id=626787 N1F80_RS01205 WP_064964524.1 265443..266051(+) (recR) [Riemerella anatipestifer strain SCVM0004]
MNFPSKVLEKAVEEISGLPGIGRKSALRLALHLLRQPSSQGIALGEAIQNLVTEIKYCKECHNFSDTDICEICADDSRHA
ELLCVVEDVRDVMAIENTGKFKGKYLVLGGKISPMEGIGPQQLNIETLESKLETGEIEEVIFALSATMEGDTTVYYLYKK
FKHFDIKFSNIARGISVGDELEYADEVSLGRSILNRIPYKGH

Nucleotide


Download         Length: 609 bp        

>NTDB_id=626787 N1F80_RS01205 WP_064964524.1 265443..266051(+) (recR) [Riemerella anatipestifer strain SCVM0004]
ATGAATTTTCCAAGTAAGGTTTTAGAAAAGGCAGTAGAAGAAATATCGGGACTTCCAGGGATAGGTAGAAAATCAGCTCT
TAGGCTAGCACTTCATTTGCTTAGACAACCGAGTTCACAAGGAATAGCTCTAGGTGAGGCTATACAAAATCTAGTTACAG
AGATAAAATATTGTAAAGAATGCCATAACTTTTCGGACACAGATATTTGCGAAATTTGTGCAGATGACAGTAGACACGCT
GAACTCCTATGCGTTGTGGAAGATGTGAGAGATGTAATGGCGATAGAAAACACAGGAAAATTCAAAGGAAAATATTTGGT
TTTAGGAGGAAAAATATCGCCTATGGAAGGTATTGGACCTCAACAATTAAATATAGAAACTTTAGAAAGCAAACTAGAAA
CAGGAGAGATAGAGGAGGTGATTTTTGCTCTGTCTGCCACTATGGAAGGCGACACCACCGTGTATTATTTGTATAAAAAG
TTTAAGCATTTTGACATTAAATTCTCCAATATTGCGAGAGGGATTTCCGTAGGAGATGAACTAGAGTACGCCGATGAAGT
TTCTTTGGGGAGGTCTATTTTGAACCGAATACCTTATAAAGGTCATTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(42-78)

Toprim domain (Toprim_4)

(83-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.837

97.03

0.406
  recR Streptococcus pneumoniae R6

41.206

98.515

0.406
  recR Bacillus subtilis subsp. subtilis str. 168

38.776

97.03

0.376