Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   N2A94_RS07215 Genome accession   NZ_CP104048
Coordinates   1399147..1400181 (-) Length   344 a.a.
NCBI ID   WP_013793667.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP20     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1394147..1405181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A94_RS07180 (N2A94_07180) - 1394934..1395236 (-) 303 WP_003103628.1 YlxQ-related RNA-binding protein -
  N2A94_RS07185 (N2A94_07185) rnpM 1395229..1395525 (-) 297 WP_003104517.1 RNase P modulator RnpM -
  N2A94_RS07190 (N2A94_07190) nusA 1395541..1396695 (-) 1155 WP_013793668.1 transcription termination factor NusA -
  N2A94_RS07195 (N2A94_07195) rimP 1396784..1397266 (-) 483 WP_003102760.1 ribosome maturation factor RimP -
  N2A94_RS07205 (N2A94_07205) trmB 1397660..1398295 (-) 636 WP_003107546.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  N2A94_RS07210 (N2A94_07210) ccrZ 1398295..1399086 (-) 792 WP_003107547.1 cell cycle regulator CcrZ -
  N2A94_RS07215 (N2A94_07215) pptB 1399147..1400181 (-) 1035 WP_013793667.1 ABC transporter permease Regulator
  N2A94_RS07220 (N2A94_07220) pptA 1400184..1400909 (-) 726 WP_003105648.1 ABC transporter ATP-binding protein Regulator
  N2A94_RS07225 (N2A94_07225) - 1401171..1401590 (+) 420 WP_003103589.1 HIT family protein -
  N2A94_RS07230 (N2A94_07230) - 1401587..1401889 (+) 303 WP_003104696.1 hypothetical protein -
  N2A94_RS07235 (N2A94_07235) - 1401922..1403211 (-) 1290 WP_013793666.1 LCP family protein -
  N2A94_RS07240 (N2A94_07240) - 1403220..1403744 (-) 525 WP_013793665.1 GNAT family N-acetyltransferase -
  N2A94_RS07245 (N2A94_07245) tsaE 1403731..1404180 (-) 450 WP_003103132.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40041.82 Da        Isoelectric Point: 9.9510

>NTDB_id=626744 N2A94_RS07215 WP_013793667.1 1399147..1400181(-) (pptB) [Streptococcus parauberis strain KSP20]
MEELFKKRKQDFQKLHRKYLPYVLNDHFVLVLVFLLGYVLYQYSQLLRHFPENHWPIIICLILLTFFLLQVGSVATYLEE
ADRQFLLAKENQLITYIDRAGRHSFVSGTVIQSVCLALLFPILARLGLSLTLFVLMLVLLAGLKWLIQKRKVAALMADSG
LNWDASIVIEKRRKQQILKFYSLFVNVKGVSTSVKERSYLNPLLRTVEKKSGSHWLNLFARAFLRSSDYLGLYIRLTFLA
LLSLIFISNDYLSMALALIFDYLLLFQLLSLYHHFDYHYLSILYPEDSKQKKADLLKLLRGVSLVLLIIEIGFTGNFINA
VIMTIFFGVMAYLYLPYKLKNIID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=626744 N2A94_RS07215 WP_013793667.1 1399147..1400181(-) (pptB) [Streptococcus parauberis strain KSP20]
ATGGAAGAATTGTTTAAAAAACGAAAGCAGGACTTTCAAAAACTTCATCGTAAGTATCTCCCCTATGTTCTGAATGATCA
TTTTGTGCTTGTACTAGTCTTTTTATTAGGCTATGTTTTATATCAATATAGCCAACTCTTGCGCCATTTTCCTGAAAATC
ACTGGCCAATTATTATTTGTCTAATTTTATTAACCTTCTTTTTATTACAGGTTGGCTCTGTGGCGACTTATTTGGAAGAG
GCTGACCGTCAGTTCTTGCTTGCCAAAGAAAATCAACTGATTACCTATATAGACAGAGCTGGGCGTCACTCATTTGTTAG
TGGAACTGTGATTCAAAGCGTTTGTTTAGCTCTGCTATTCCCCATCTTAGCAAGACTTGGCCTATCGCTGACGCTCTTTG
TTCTCATGTTGGTACTCTTAGCTGGTTTGAAGTGGTTGATCCAGAAAAGGAAAGTAGCTGCGCTGATGGCCGATAGTGGC
TTGAATTGGGATGCTAGTATTGTCATTGAGAAAAGACGAAAGCAACAAATTCTGAAGTTTTATTCCCTTTTTGTAAATGT
CAAGGGTGTATCCACCAGTGTAAAAGAAAGATCTTACTTAAATCCGCTTTTAAGAACTGTTGAAAAAAAATCAGGCTCAC
ATTGGCTCAATCTCTTTGCGCGTGCTTTTTTGCGAAGCTCAGATTATCTTGGTCTCTATATTAGATTAACCTTTTTAGCA
TTATTATCACTAATATTTATTAGTAATGATTATTTATCAATGGCTTTGGCGTTGATTTTTGACTACCTTTTATTATTTCA
ATTGCTGTCACTATATCATCATTTTGATTATCATTACTTATCAATTTTATATCCGGAAGATAGTAAGCAAAAGAAAGCTG
ATTTACTCAAATTATTACGAGGGGTATCTTTGGTTTTATTGATCATAGAGATTGGATTTACAGGCAATTTCATAAATGCT
GTAATCATGACTATCTTCTTTGGGGTAATGGCCTATCTCTATTTGCCTTATAAGTTAAAGAACATAATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

43.314

100

0.433

  pptB Streptococcus salivarius strain HSISS4

41.86

100

0.419