Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   LN246_RS02225 Genome accession   NZ_CP087124
Coordinates   425308..425694 (-) Length   128 a.a.
NCBI ID   WP_229937581.1    Uniprot ID   -
Organism   Sulfurovum mangrovi strain ST1-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 420308..430694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN246_RS02200 (LN246_02200) - 421300..421659 (+) 360 WP_229937576.1 hypothetical protein -
  LN246_RS02205 (LN246_02205) - 421714..422001 (-) 288 WP_229937577.1 helix-hairpin-helix domain-containing protein -
  LN246_RS02210 (LN246_02210) - 422215..423423 (+) 1209 WP_229937578.1 efflux RND transporter periplasmic adaptor subunit -
  LN246_RS02215 (LN246_02215) - 423420..424100 (+) 681 WP_229937579.1 ABC transporter ATP-binding protein -
  LN246_RS02220 (LN246_02220) - 424090..425301 (+) 1212 WP_229937580.1 ABC transporter permease -
  LN246_RS02225 (LN246_02225) dprB 425308..425694 (-) 387 WP_229937581.1 Holliday junction resolvase RuvX Machinery gene
  LN246_RS02230 (LN246_02230) - 425720..426244 (-) 525 WP_229937582.1 hypothetical protein -
  LN246_RS02235 (LN246_02235) - 426382..428574 (+) 2193 WP_229937583.1 response regulator -
  LN246_RS02240 (LN246_02240) - 428575..428976 (-) 402 WP_229937584.1 YchJ family protein -
  LN246_RS02245 (LN246_02245) - 428986..429606 (-) 621 WP_229937585.1 C40 family peptidase -
  LN246_RS02250 (LN246_02250) queA 429616..430659 (-) 1044 WP_229937586.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14493.82 Da        Isoelectric Point: 6.4844

>NTDB_id=626744 LN246_RS02225 WP_229937581.1 425308..425694(-) (dprB) [Sulfurovum mangrovi strain ST1-3]
MKLASIDVGLKRIGVAICLDGKIILPQEAILRKNRNQAARDVKTFLDEWEIEKLIVGLPKGGSAEEEMERRIKHFVALLD
LGIEVDYQDEQGSSFEAKELTKGDFRHKRDGRLDSMAAKIILERYLGL

Nucleotide


Download         Length: 387 bp        

>NTDB_id=626744 LN246_RS02225 WP_229937581.1 425308..425694(-) (dprB) [Sulfurovum mangrovi strain ST1-3]
ATGAAATTAGCAAGTATAGATGTAGGACTAAAACGTATCGGTGTAGCGATCTGCCTGGACGGCAAGATCATTTTGCCGCA
AGAGGCGATCCTGAGAAAAAACCGCAACCAGGCTGCAAGGGATGTCAAAACCTTTTTGGATGAGTGGGAGATAGAGAAGC
TCATTGTGGGCCTTCCCAAAGGGGGCTCTGCCGAAGAGGAGATGGAGCGCCGTATCAAACACTTTGTTGCATTGCTTGAC
CTGGGTATCGAGGTAGACTACCAGGATGAACAGGGCTCCAGTTTCGAAGCCAAAGAGCTGACCAAAGGCGACTTCAGACA
CAAGAGGGACGGACGCCTTGACTCGATGGCAGCCAAGATCATCCTCGAGAGGTATCTTGGCCTCTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

49.206

98.438

0.484