Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   N2A94_RS00060 Genome accession   NZ_CP104048
Coordinates   12043..13137 (-) Length   364 a.a.
NCBI ID   WP_013794542.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7043..18137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A94_RS00045 (N2A94_00045) - 7841..8713 (-) 873 WP_003104058.1 YitT family protein -
  N2A94_RS00050 (N2A94_00050) trpS 9109..10131 (+) 1023 WP_003107950.1 tryptophan--tRNA ligase -
  N2A94_RS00055 (N2A94_00055) guaB 10374..11855 (+) 1482 WP_003107949.1 IMP dehydrogenase -
  N2A94_RS00060 (N2A94_00060) recF 12043..13137 (-) 1095 WP_013794542.1 DNA replication/repair protein RecF Machinery gene
  N2A94_RS00065 (N2A94_00065) yaaA 13140..13544 (-) 405 WP_003103342.1 S4 domain-containing protein YaaA -
  N2A94_RS00070 (N2A94_00070) yfmF 13921..15165 (+) 1245 WP_003105281.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  N2A94_RS00075 (N2A94_00075) yfmH 15165..16445 (+) 1281 WP_045407577.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  N2A94_RS00080 (N2A94_00080) - 16495..17472 (+) 978 WP_003107947.1 RodZ family helix-turn-helix domain-containing protein -
  N2A94_RS00085 (N2A94_00085) pgsA 17485..18027 (+) 543 WP_003105484.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41864.98 Da        Isoelectric Point: 8.9772

>NTDB_id=626682 N2A94_RS00060 WP_013794542.1 12043..13137(-) (recF) [Streptococcus parauberis strain KSP20]
MWLKELTLNHFRNYNDLNINFSEGLNIFIGNNAQGKTNILEAIYFIALTRSHRTRSDKELIQFSTDRLSIEGKLNRLSGN
ISLEINLSDKGRITKINSLKQAKLSEYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSDLSNYNHILKQR
NAYLKAARTIDFDFLVVLDQQLSYYGSRVIQQRIQFIADLEKEADAHHQAISNELESLQIKYISSIDTSQSQLIQKKFME
QLERNRQRDIFRKNTSIGPHRDDIEFYINNMNANFASQGQHRSLILSIKMAEVSLMKILTGDNPILLLDDVMSELDNTRQ
TKLIETVIQENVQTFITTTSLEHLLQLPKTLKTFHVTSGTIKAD

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=626682 N2A94_RS00060 WP_013794542.1 12043..13137(-) (recF) [Streptococcus parauberis strain KSP20]
ATGTGGTTAAAGGAATTAACACTAAATCACTTTAGAAATTATAATGACTTAAATATAAATTTTTCAGAGGGACTAAACAT
CTTTATAGGAAACAATGCCCAAGGAAAAACGAACATCTTAGAAGCTATCTATTTTATTGCCTTAACTAGAAGTCATCGCA
CAAGAAGTGATAAAGAATTAATCCAGTTTTCAACTGATCGTTTATCTATTGAAGGAAAATTAAATCGCCTCTCAGGTAAT
ATCAGTTTAGAAATTAATTTATCTGATAAAGGTCGAATAACAAAGATTAATTCATTAAAACAAGCAAAACTTTCTGAATA
TATAGGTACAATGATGGTAGTACTCTTTGCTCCTGAAGATTTACAATTAGTTAAAGGCGCTCCTAGTCTTCGAAGAAAGT
TTATTGATATTGATTTAGGTCAAATTAAACCTGTTTATCTATCTGACTTGTCGAATTATAACCATATTTTAAAACAAAGA
AACGCTTATTTAAAAGCTGCTAGAACAATTGATTTTGACTTTCTAGTAGTTTTGGATCAACAATTATCATATTATGGTAG
CCGTGTTATTCAGCAAAGAATTCAATTCATAGCTGATCTTGAAAAAGAAGCAGATGCTCATCATCAGGCAATATCAAATG
AACTAGAAAGTTTACAAATTAAATATATTTCTAGCATTGATACAAGTCAAAGTCAACTTATTCAAAAAAAATTCATGGAG
CAACTTGAAAGAAATCGTCAACGTGATATTTTTAGAAAGAATACGAGTATTGGCCCACATAGAGATGACATTGAATTTTA
TATAAATAATATGAATGCAAATTTTGCAAGCCAAGGTCAACATCGAAGCTTAATTTTATCCATAAAGATGGCTGAAGTGA
GTTTAATGAAAATCTTGACTGGAGATAATCCAATACTACTGTTAGATGATGTTATGAGTGAATTAGACAATACAAGACAA
ACAAAATTAATTGAGACTGTCATTCAAGAAAATGTTCAAACTTTTATTACTACTACTAGTTTGGAACACCTCTTGCAACT
TCCAAAAACTTTAAAAACTTTTCATGTAACTAGTGGAACCATTAAGGCAGACTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

61.003

98.626

0.602
  recF Bacillus subtilis subsp. subtilis str. 168

45.272

95.879

0.434