Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   N2A96_RS09545 Genome accession   NZ_CP104047
Coordinates   1890024..1890473 (-) Length   149 a.a.
NCBI ID   WP_003107776.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP10     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1885024..1895473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A96_RS09530 (N2A96_09530) - 1885230..1886489 (+) 1260 WP_003107773.1 NAD(P)H-dependent oxidoreductase -
  N2A96_RS09535 (N2A96_09535) - 1886538..1888322 (-) 1785 WP_013794470.1 ABC transporter ATP-binding protein -
  N2A96_RS09540 (N2A96_09540) rcrP 1888322..1890031 (-) 1710 WP_003107775.1 ABC transporter ATP-binding protein Regulator
  N2A96_RS09545 (N2A96_09545) rcrR 1890024..1890473 (-) 450 WP_003107776.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  N2A96_RS09550 (N2A96_09550) - 1890680..1891696 (+) 1017 WP_003107779.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  N2A96_RS09555 (N2A96_09555) galU 1891718..1892623 (+) 906 WP_003103063.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  N2A96_RS09560 (N2A96_09560) - 1892646..1893320 (-) 675 WP_003107780.1 rhomboid family intramembrane serine protease -
  N2A96_RS09565 (N2A96_09565) - 1893317..1893844 (-) 528 WP_003107782.1 5-formyltetrahydrofolate cyclo-ligase -
  N2A96_RS09570 (N2A96_09570) - 1893957..1895324 (+) 1368 WP_003105465.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17278.97 Da        Isoelectric Point: 6.9820

>NTDB_id=626669 N2A96_RS09545 WP_003107776.1 1890024..1890473(-) (rcrR) [Streptococcus parauberis strain KSP10]
MSRIIADLRDLTHQIEQITEEIAQAYHIDQLAGPQGHVLVFLERNQDREIFVKDIEKTLNISKSVSSNLVKRMEKNGFIE
VVPSIADKRFKQVVLTEVGKEKIPLLHECRKAIENYFFKEISKDDFMTVKHVIDQLKLNIAEYKGEKNA

Nucleotide


Download         Length: 450 bp        

>NTDB_id=626669 N2A96_RS09545 WP_003107776.1 1890024..1890473(-) (rcrR) [Streptococcus parauberis strain KSP10]
ATGTCACGTATTATTGCTGATCTTCGTGATTTGACTCATCAAATTGAACAAATCACTGAAGAAATTGCGCAAGCTTACCA
TATTGACCAGTTAGCTGGGCCTCAAGGCCATGTACTTGTTTTCTTGGAAAGAAATCAGGACCGAGAAATCTTTGTTAAAG
ATATTGAAAAAACATTAAATATCTCAAAATCAGTTTCCAGTAATTTAGTTAAACGCATGGAAAAAAATGGTTTTATTGAA
GTAGTTCCTTCAATAGCAGATAAACGTTTTAAACAAGTCGTATTAACAGAGGTTGGAAAAGAAAAGATTCCTTTGTTGCA
TGAATGCCGGAAGGCTATCGAAAATTATTTTTTCAAGGAAATATCAAAAGATGACTTTATGACAGTCAAGCATGTCATAG
ACCAGCTAAAACTAAATATTGCTGAATACAAAGGAGAGAAAAATGCTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(32-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.857

93.96

0.403