Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   N2A96_RS09540 Genome accession   NZ_CP104047
Coordinates   1888322..1890031 (-) Length   569 a.a.
NCBI ID   WP_003107775.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KSP10     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1883322..1895031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A96_RS09515 (N2A96_09515) - 1883468..1883911 (-) 444 WP_003107771.1 dUTP diphosphatase -
  N2A96_RS09520 (N2A96_09520) - 1884070..1884429 (-) 360 WP_003107772.1 YbaN family protein -
  N2A96_RS09525 (N2A96_09525) - 1884609..1885211 (+) 603 WP_003104239.1 NADPH-dependent FMN reductase -
  N2A96_RS09530 (N2A96_09530) - 1885230..1886489 (+) 1260 WP_003107773.1 NAD(P)H-dependent oxidoreductase -
  N2A96_RS09535 (N2A96_09535) - 1886538..1888322 (-) 1785 WP_013794470.1 ABC transporter ATP-binding protein -
  N2A96_RS09540 (N2A96_09540) rcrP 1888322..1890031 (-) 1710 WP_003107775.1 ABC transporter ATP-binding protein Regulator
  N2A96_RS09545 (N2A96_09545) rcrR 1890024..1890473 (-) 450 WP_003107776.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  N2A96_RS09550 (N2A96_09550) - 1890680..1891696 (+) 1017 WP_003107779.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  N2A96_RS09555 (N2A96_09555) galU 1891718..1892623 (+) 906 WP_003103063.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  N2A96_RS09560 (N2A96_09560) - 1892646..1893320 (-) 675 WP_003107780.1 rhomboid family intramembrane serine protease -
  N2A96_RS09565 (N2A96_09565) - 1893317..1893844 (-) 528 WP_003107782.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 62871.71 Da        Isoelectric Point: 5.6472

>NTDB_id=626668 N2A96_RS09540 WP_003107775.1 1888322..1890031(-) (rcrP) [Streptococcus parauberis strain KSP10]
MLKNAIMRYKWYALGSVLMIIAVVASALLQPHYLKDVLSAVMKNDTDKITEVGQILLIIAGVGLIAGTVNTILAAKIAQG
VSADIREKVFRKIQSFSYANVEEFNAGNLVVRMTNDVNQIQNLVMMIFQVLLRLPILFIGAFIMAVNTLPKLWWVIILMV
VLIAIIMALVMSQMGPRFGKFQTLMDKINRIAKENLRGVRVVKSFVQEREQYAKFKETSNELLDLNMFIGYGFSMMQPAL
MLVSYLAVFVSLLLVSKMVKTDPTVIGSIASFMTYMMQIMFSIIMVGFMGMQASRAFISIGRLKEVLETEPAMTFATEEV
EDLNGDIVFDHVSFSYPNEEDAMLKDISFSIKSGQMVGVVGATGAGKSTLAQLIPRLFDPQEGTITIGGKDLKTLSQQTL
RETVSIVLQKAILFSGTIADNLRQGNLTADLQAMESAARIAQAQEFIDRMDLAYESEVEERGNNFSGGQKQRMSIARGVI
SNPKVLVLDDSTSALDAKSEKLVQEALNKDLKDTTTIIIAQKISSVVKADTILVLDEGKLIGQGTHAELVANNAVYREIY
DTQKGKEED

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=626668 N2A96_RS09540 WP_003107775.1 1888322..1890031(-) (rcrP) [Streptococcus parauberis strain KSP10]
ATGCTTAAAAATGCCATCATGCGTTATAAATGGTATGCCCTAGGTTCTGTCTTAATGATCATAGCAGTTGTAGCAAGTGC
ATTGTTACAACCTCATTATCTGAAAGATGTGCTAAGTGCAGTCATGAAAAATGACACAGATAAAATTACAGAAGTTGGAC
AGATATTATTGATTATTGCAGGAGTTGGTTTAATTGCCGGTACTGTCAATACCATTTTAGCAGCTAAGATAGCTCAAGGT
GTATCAGCTGATATCCGTGAGAAGGTATTTAGAAAAATCCAAAGTTTTTCATATGCTAATGTTGAGGAATTTAATGCTGG
TAATTTAGTTGTTCGTATGACCAACGATGTTAACCAAATCCAAAACTTGGTGATGATGATTTTCCAAGTCTTGCTCCGTT
TACCGATTTTATTTATAGGTGCCTTTATTATGGCGGTTAACACTTTACCAAAACTATGGTGGGTTATTATCCTGATGGTT
GTATTAATTGCTATTATTATGGCCCTTGTTATGAGTCAAATGGGCCCACGTTTTGGGAAGTTCCAAACCTTGATGGATAA
AATTAATCGTATTGCTAAAGAGAATCTACGTGGTGTTCGTGTCGTTAAATCGTTCGTTCAAGAAAGAGAACAATATGCTA
AATTCAAAGAGACATCAAATGAACTATTAGATCTTAATATGTTTATTGGGTACGGTTTTTCAATGATGCAACCAGCTTTA
ATGCTAGTTTCGTATTTAGCTGTTTTTGTATCACTCTTATTAGTTTCCAAGATGGTAAAAACAGATCCAACAGTTATAGG
TAGTATTGCTTCCTTCATGACTTATATGATGCAAATCATGTTTTCAATTATTATGGTTGGATTCATGGGGATGCAAGCTA
GTCGTGCTTTTATTTCAATTGGTCGTCTGAAAGAAGTTTTAGAGACAGAACCTGCAATGACTTTTGCTACTGAAGAAGTT
GAAGATTTAAATGGCGATATTGTTTTTGATCATGTATCTTTCTCATATCCAAATGAAGAAGATGCTATGTTAAAAGATAT
TTCCTTCTCTATTAAATCTGGGCAAATGGTTGGTGTCGTTGGCGCAACAGGTGCCGGAAAATCAACCTTGGCTCAATTAA
TTCCTCGTTTATTTGACCCACAAGAGGGTACAATCACAATTGGTGGTAAAGATTTAAAAACACTCAGCCAACAAACACTC
CGCGAAACAGTTTCAATTGTTTTGCAAAAAGCCATTCTCTTTTCGGGGACTATTGCAGATAACCTTCGCCAAGGAAATTT
AACAGCTGATTTACAAGCTATGGAAAGTGCTGCTAGAATCGCGCAAGCTCAAGAATTTATTGACCGAATGGATTTAGCCT
ACGAAAGTGAAGTTGAAGAACGTGGAAATAATTTCTCTGGTGGTCAGAAACAACGGATGTCCATTGCTCGTGGGGTTATC
AGTAATCCCAAGGTCTTAGTCTTGGACGATTCAACGTCAGCCTTAGATGCTAAGTCAGAGAAACTAGTCCAAGAAGCTTT
AAACAAGGACTTGAAAGATACAACAACAATTATCATTGCACAAAAGATTTCGTCAGTGGTTAAAGCCGATACTATCTTAG
TTTTAGATGAAGGTAAGTTAATTGGTCAAGGAACCCATGCTGAATTAGTAGCAAATAATGCAGTCTACCGTGAAATTTAT
GATACACAGAAAGGTAAGGAGGAAGACTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(344-493)

ABC transporter transmembrane region (ABC_membrane)

(16-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

35.017

100

0.366