Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   N2A96_RS07140 Genome accession   NZ_CP104047
Coordinates   1400547..1401143 (-) Length   198 a.a.
NCBI ID   WP_003107285.1    Uniprot ID   A0ABN0IRI7
Organism   Streptococcus parauberis strain KSP10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1395547..1406143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A96_RS07120 (N2A96_07120) - 1396361..1397053 (-) 693 WP_003107281.1 TIGR02206 family membrane protein -
  N2A96_RS07125 (N2A96_07125) murF 1397152..1398522 (-) 1371 WP_003107283.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  N2A96_RS07130 (N2A96_07130) - 1398789..1399346 (+) 558 WP_003105280.1 folate family ECF transporter S component -
  N2A96_RS07135 (N2A96_07135) - 1399387..1400433 (-) 1047 WP_003107284.1 D-alanine--D-alanine ligase -
  N2A96_RS07140 (N2A96_07140) recR 1400547..1401143 (-) 597 WP_003107285.1 recombination mediator RecR Machinery gene
  N2A96_RS07145 (N2A96_07145) pbp2b 1401158..1403248 (-) 2091 WP_003107286.1 penicillin-binding protein PBP2B -
  N2A96_RS07150 (N2A96_07150) - 1403345..1404115 (-) 771 WP_003102739.1 formate/nitrite transporter family protein -
  N2A96_RS07155 (N2A96_07155) - 1404217..1404759 (-) 543 WP_003107287.1 hypothetical protein -
  N2A96_RS07160 (N2A96_07160) - 1404824..1405345 (-) 522 WP_003104515.1 transcription repressor NadR -
  N2A96_RS07165 (N2A96_07165) - 1405439..1406131 (-) 693 WP_003104178.1 phosphoglycerate mutase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21644.87 Da        Isoelectric Point: 4.6666

>NTDB_id=626641 N2A96_RS07140 WP_003107285.1 1400547..1401143(-) (recR) [Streptococcus parauberis strain KSP10]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSDEDVNDFAKNLLAAKRELTYCSICGNLTDDDPCGICTDPNRNQE
IILVVEESKDVSAMEKIQEYHGLYHVLHGLISPMNGVGPDDINLKPLITRLMDGKVNEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=626641 N2A96_RS07140 WP_003107285.1 1400547..1401143(-) (recR) [Streptococcus parauberis strain KSP10]
GTGTTATATCCCACACCAATAGCAAAATTAATTGATAGTTATTCAAAGTTACCAGGAATTGGTATTAAAACAGCAACTCG
TTTAGCATTTTATACAATTGGAATGAGTGATGAAGATGTCAATGATTTTGCCAAAAATTTATTAGCAGCAAAACGTGAAT
TAACTTACTGCTCTATTTGTGGAAATTTAACAGATGATGATCCTTGTGGAATCTGTACCGACCCAAATCGTAACCAAGAA
ATTATTCTTGTTGTTGAAGAATCAAAAGATGTTTCAGCTATGGAAAAGATTCAAGAATATCATGGGTTATATCATGTTCT
TCATGGTCTAATTTCACCAATGAATGGTGTTGGTCCGGATGATATCAATTTAAAACCTTTAATTACGCGACTAATGGATG
GGAAAGTTAATGAGGTTATCGTTGCTACAAATGCAACTGCTGATGGCGAAGCGACTTCTATGTATATTTCCCGTGTACTT
AAGCCAGCCGGAATAAAAGTTACGCGGTTGGCTAGAGGATTAGCAGTAGGGTCCGATATCGAATATGCAGATGAAGTTAC
TTTACTGCGAGCTATCGAAAACAGAACAGAACTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.374

100

0.874
  recR Bacillus subtilis subsp. subtilis str. 168

62.626

100

0.626
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.282

98.485

0.505