Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HQN46_RS20150 Genome accession   NZ_CP087103
Coordinates   3965927..3967666 (-) Length   579 a.a.
NCBI ID   WP_000947736.1    Uniprot ID   A0AB73RPG8
Organism   Bacillus toyonensis strain HA0190     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3960927..3972666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN46_RS20120 (HQN46_0020120) - 3961953..3962090 (+) 138 Protein_3921 recombinase family protein -
  HQN46_RS20125 (HQN46_0020125) - 3962403..3962828 (-) 426 WP_144467022.1 hypothetical protein -
  HQN46_RS20130 (HQN46_0020130) - 3962925..3963065 (-) 141 WP_176220233.1 hypothetical protein -
  HQN46_RS20135 (HQN46_0020135) - 3963055..3963261 (-) 207 WP_085450664.1 site-specific integrase -
  HQN46_RS20140 (HQN46_0020140) spo0A 3963427..3964221 (-) 795 WP_000411416.1 sporulation transcription factor Spo0A Regulator
  HQN46_RS20145 (HQN46_0020145) spoIVB 3964510..3965808 (-) 1299 WP_002048975.1 SpoIVB peptidase -
  HQN46_RS20150 (HQN46_0020150) recN 3965927..3967666 (-) 1740 WP_000947736.1 DNA repair protein RecN Machinery gene
  HQN46_RS20155 (HQN46_0020155) argR 3967928..3968377 (-) 450 WP_001032581.1 arginine repressor ArgR -
  HQN46_RS20160 (HQN46_0020160) - 3968520..3969362 (-) 843 WP_001274740.1 TlyA family RNA methyltransferase -
  HQN46_RS20165 (HQN46_0020165) dxs 3969366..3971258 (-) 1893 WP_000366442.1 1-deoxy-D-xylulose-5-phosphate synthase -
  HQN46_RS20170 (HQN46_0020170) ispA 3971560..3972450 (-) 891 WP_000150368.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65834.86 Da        Isoelectric Point: 4.7945

>NTDB_id=626616 HQN46_RS20150 WP_000947736.1 3965927..3967666(-) (recN) [Bacillus toyonensis strain HA0190]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGERIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEENELTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLRENLDMMEYDPNRLDEIETRLNEIRMLKRKYGNN
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGIASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=626616 HQN46_RS20150 WP_000947736.1 3965927..3967666(-) (recN) [Bacillus toyonensis strain HA0190]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGTTTAACAGTTTT
AAGTGGTGAAACAGGAGCTGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCGGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAAGGGTTATTTTATGTGGAAGACGATAAGCATCCATGTATTGAAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATTGCTGCAAACGGAAAGAGTGTATG
TCGTGTAAATGGGAAACTTGTCACCCTTAGTATATTAAAAGAGATTGGCAAAACGCTTGTTGATATTCATGGACAGCACG
AAACGCAAGACTTAATGAATGAAGAGCGACATCTGTTTATGCTCGATCATTTTGATGGGGAGCGTATTGTTAAACAGTTG
GATATATATCAAAATGTATACGCTGACTATGAGAAATTAAAAAAACAATTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCACATCGCTTAGATTTAATTCAATTTCAGCATGAAGAAATCCGTAAGGCTGATTTAAAGATGGATGAAGAAAATGAAT
TAACTGAGGAACGATTGCAAATTTCTAATTTTGAAAAGATTTATAAAGCGTTAGGTGATGCATATCGTTCGTTAAGTGCT
GACGGACAAGGATTAGATAATGTAAGAAGTGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTATATCAAGA
AAATCATGATTCAATTGCAAATAGCTATTACTTATTAGAAGAAGTTGCGTATCAACTTAGAGAAAATCTCGATATGATGG
AATATGATCCGAATCGTCTAGATGAAATTGAAACACGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATAAT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAGCAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAGCAGTTAAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAACTTG
CAGAGCATCTTACAAATGCTATTCATCAAGAATTAAAAGAACTATATATGGAAAAAACGAAATTTGAAGTGAGAATCATG
AAGAGAGAAGGAAATGCAGAAGAACCTCTTGTGGAAGGCGCACCGGTGCGCCTTACGGCGGACGGCTATGATCACGTGGA
GTTTTATATTTCAACGAATCCCGGTGAACCGTTAAAACCACTTTCAAAGGTCGCTTCTGGTGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGTATTTTTTCTAAACATCAAGGTATTGCATCTGTTATTTTTGATGAAGTGGATACTGGTGTGAGT
GGTCGAGTTGCACAGGCTATTGCGGAAAAAATTTATCGTGTATCAGTAAACTCACAAGTGCTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCGCATTTATTTATTCGAAAACAGGTAGCGAATGATCGGACAATTACATCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAGTTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.758

100

0.598