Detailed information NTG0626520

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: N2A93_RS04380
• Genome accession: NZ_CP104046
• Coordinates: 833956..836064 (-)
• Length: 702 a.a.
• NCBI ID: WP_003105519.1
• Uniprot ID: -
• Organism: Streptococcus parauberis strain KSP14
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 828956..841064

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N2A93_RS04355 (N2A93_04355)	-	829630..830469 (+)	840	WP_003106617.1	thymidylate synthase	-
N2A93_RS04360 (N2A93_04360)	-	830546..831061 (+)	516	WP_003106618.1	dihydrofolate reductase	-
N2A93_RS04365 (N2A93_04365)	clpX	831266..832495 (+)	1230	WP_003103169.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
N2A93_RS04370 (N2A93_04370)	yihA	832504..833103 (+)	600	WP_003106619.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
N2A93_RS04375 (N2A93_04375)	-	833268..833933 (+)	666	WP_003106620.1	hypothetical protein	-
N2A93_RS04380 (N2A93_04380)	clpC	833956..836064 (-)	2109	WP_003105519.1	AAA family ATPase	Regulator
N2A93_RS04385 (N2A93_04385)	rplJ	836515..837015 (+)	501	WP_003104757.1	50S ribosomal protein L10	-
N2A93_RS04390 (N2A93_04390)	rplL	837081..837446 (+)	366	WP_003103838.1	50S ribosomal protein L7/L12	-
N2A93_RS04400 (N2A93_04400)	-	838135..838989 (+)	855	WP_003106628.1	replication initiator protein A	-
N2A93_RS04405 (N2A93_04405)	-	838986..839147 (+)	162	WP_003104080.1	hypothetical protein	-
N2A93_RS10570	-	839544..839630 (+)	87	WP_375543854.1	YSIRK-type signal peptide-containing protein	-

Sequence

Protein

• Length: 702 a.a.
• Molecular weight: 77655.54 Da
• Isoelectric Point: 4.8649

>NTDB_id=626520 N2A93_RS04380 WP_003105519.1 833956..836064(-) (clpC) [Streptococcus parauberis strain KSP14]
MTNYYGKDPFGSMDDIFNQLMGNTGGYQTENRRYLVNGREMTPEEFQEYRQTGKLSSTAPTQEQGYPQNQKEDGILNQLG
TNLTEEARQGHLDPVIGRNKEIQDTAEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVAGDVPAAIKNKEIISIDISGL
EAGTQYRGAFEENIQNLIKEVKEAGNVILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTI
LKNAALARRFNEVKVNAPSAEDTFHILMGIRNLYEQHHNVILPDSVLKAAVDYSVQYIPQRSLPDKAIDLIDMTAAHLAA
QHPVTDLKSLETAIASEKDKQEKAVAAEDYELALQAKVRIEELQKQMANHTEGQKVTATINDVAESVERLTGVPVSNMGA
SDLERLKEIGNRLRGHVIGQDQAVQAVAKAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDAIIRLD
MSEYSDRTAVSKLIGTTAGYVGYDDNQYTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTIDFKNT
VIIATSNAGFGNEALTGQEDHDQKIMDRIAPYFRPEFLNRFNGVIEFSHLEKKDLKEIVELMLTEVNQTINKKGITLEVT
EPVKEELIELGYDKAMGVRPLRRVIEQEIRDRITDYYLEHPDDKHLKANLADGQIVISKQDK

Nucleotide

• Length: 2109 bp

>NTDB_id=626520 N2A93_RS04380 WP_003105519.1 833956..836064(-) (clpC) [Streptococcus parauberis strain KSP14]
ATGACAAACTATTATGGAAAAGACCCTTTTGGTAGCATGGATGACATTTTTAATCAATTGATGGGTAACACAGGCGGTTA
TCAAACTGAAAATCGTCGTTACCTAGTTAATGGGCGTGAAATGACACCTGAAGAATTTCAAGAATATCGACAAACTGGTA
AGCTCAGTTCTACTGCTCCTACTCAGGAACAAGGCTATCCCCAAAATCAAAAAGAAGATGGCATTCTAAACCAATTAGGT
ACCAACTTAACTGAAGAAGCACGACAAGGACACTTAGATCCAGTCATTGGACGAAATAAAGAAATTCAAGATACAGCTGA
AATATTAGCTCGCCGGACCAAGAACAATCCCGTTCTAGTAGGTGATGCGGGGGTTGGTAAAACAGCTGTGGTCGAAGGCT
TAGCCCAAGCTATCGTTGCTGGTGACGTCCCTGCTGCCATTAAAAACAAAGAAATTATTTCTATTGATATTTCCGGCTTA
GAAGCAGGTACTCAATACCGTGGTGCTTTTGAAGAAAATATTCAGAATTTAATTAAAGAAGTTAAAGAAGCCGGGAATGT
TATCCTCTTCTTTGATGAAATTCATCAAATTTTAGGCGCTGGCTCAACAGGTGGTGATTCTGGTTCCAAAGGCTTGGCCG
ATATTCTTAAACCAGCCCTATCTCGTGGCGAGTTGACCGTCATCGGTGCGACAACTCAAGATGAATATCGAAACACTATT
CTGAAAAATGCGGCCTTGGCTCGTCGTTTTAACGAAGTTAAAGTCAATGCGCCTTCTGCCGAAGATACCTTCCACATTTT
GATGGGTATCAGGAATCTTTATGAGCAACACCACAACGTCATTCTTCCGGATTCTGTTTTGAAAGCAGCCGTGGATTACT
CCGTTCAGTACATTCCACAGCGTAGTCTTCCAGATAAAGCCATCGATTTAATTGACATGACGGCTGCCCATTTAGCTGCG
CAACACCCAGTCACTGATTTGAAGAGTCTTGAAACAGCAATTGCTAGTGAGAAAGACAAGCAAGAAAAGGCTGTCGCTGC
AGAAGATTATGAGTTAGCCTTGCAAGCTAAAGTACGAATTGAAGAATTACAAAAGCAAATGGCAAACCATACCGAAGGTC
AAAAAGTGACCGCAACCATCAACGATGTCGCCGAATCAGTTGAACGTCTAACCGGCGTACCAGTTTCCAATATGGGCGCA
AGTGACTTAGAACGTTTGAAAGAAATTGGCAACCGACTTAGAGGACATGTCATCGGACAGGATCAAGCTGTTCAAGCAGT
CGCAAAGGCTATCCGTCGTAACCGTGCCGGCTTTGATGATGGCAATCGCCCAATTGGGTCATTCCTCTTTGTTGGTCCGA
CCGGCGTTGGTAAAACGGAATTAGCCAAACAGCTTGCGCTTGACATGTTTGGTTCCAAGGATGCGATCATTCGTTTAGAT
ATGTCAGAATACAGTGATCGCACTGCCGTTTCTAAATTGATTGGGACTACTGCTGGTTATGTTGGTTACGACGACAATCA
ATACACATTAACTGAACGTGTCCGTCGTAATCCATACTCAATTATTTTACTGGATGAAATTGAAAAAGCAGACCCACAAG
TCATTACCCTACTACTCCAAGTATTAGATGATGGTCGTTTAACTGATGGCCAAGGTAATACGATTGACTTCAAAAATACA
GTGATTATTGCTACATCTAATGCTGGTTTTGGCAATGAAGCATTAACGGGTCAAGAAGATCATGACCAAAAAATTATGGA
CCGAATCGCTCCTTATTTTAGACCTGAATTCTTAAATCGTTTTAATGGTGTGATTGAATTCTCACATCTAGAAAAAAAGG
ATTTGAAAGAAATTGTTGAATTAATGTTAACGGAAGTTAATCAAACAATCAATAAAAAAGGTATCACTTTAGAAGTAACA
GAACCTGTTAAAGAGGAACTAATTGAATTAGGATATGACAAAGCTATGGGAGTTAGACCATTACGCCGTGTCATTGAACA
AGAAATCCGTGACCGTATAACAGACTATTATTTGGAACATCCCGATGATAAACATCTAAAAGCAAATTTAGCAGATGGTC
AAATTGTGATTAGTAAACAAGACAAATGA

Domains

Predicted by InterProScan.

• AAA lid domain (AAA_lid_9) (259-353)

• ATPase family associated with various cellular activities (AAA) (AAA) (118-250)

• AAA domain (Cdc48 subfamily) (AAA_2) (443-602)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (610-680)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	48.515	100	0.489
clpE	Streptococcus mutans UA159	47.532	100	0.48
clpE	Streptococcus pneumoniae Rx1	46.968	100	0.474
clpE	Streptococcus pneumoniae D39	46.968	100	0.474
clpE	Streptococcus pneumoniae R6	46.968	100	0.474
clpE	Streptococcus pneumoniae TIGR4	46.968	100	0.474
clpC	Bacillus subtilis subsp. subtilis str. 168	44.651	91.88	0.41
clpC	Streptococcus pneumoniae TIGR4	41.617	95.157	0.396
clpC	Streptococcus pneumoniae Rx1	41.617	95.157	0.396
clpC	Streptococcus pneumoniae D39	41.617	95.157	0.396
clpC	Streptococcus mutans UA159	40.399	92.735	0.375
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.842	88.177	0.369
clpC	Streptococcus thermophilus LMG 18311	41.44	89.031	0.369
clpC	Streptococcus thermophilus LMD-9	41.506	88.889	0.369