Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   MRX62_RS11285 Genome accession   NZ_CP104027
Coordinates   2372970..2374772 (-) Length   600 a.a.
NCBI ID   WP_060871855.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. pauca strain 50088     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2367970..2379772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRX62_RS11265 (MRX62_11280) trpA 2368578..2369384 (+) 807 WP_010893880.1 tryptophan synthase subunit alpha -
  MRX62_RS11270 (MRX62_11285) radA/sms 2369616..2371007 (-) 1392 WP_060871888.1 DNA repair protein RadA Machinery gene
  MRX62_RS11275 (MRX62_11290) - 2371205..2372170 (+) 966 WP_010893883.1 LLM class flavin-dependent oxidoreductase -
  MRX62_RS11280 (MRX62_11295) - 2372371..2372847 (-) 477 WP_010893884.1 hypothetical protein -
  MRX62_RS11285 (MRX62_11300) recQ 2372970..2374772 (-) 1803 WP_060871855.1 DNA helicase RecQ Machinery gene
  MRX62_RS11290 (MRX62_11305) - 2374952..2375494 (-) 543 WP_031336807.1 Dps family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 67457.16 Da        Isoelectric Point: 8.3115

>NTDB_id=626461 MRX62_RS11285 WP_060871855.1 2372970..2374772(-) (recQ) [Xylella fastidiosa subsp. pauca strain 50088]
MSTSSATQTVLQRVFGYDTFRGPQQAIIEHVAAGHDALVLMPTGGGKSLCYQVPALLRKGIGVVISPLIALMQDQVETLR
QLGVRAAYLNSTLDATQAQRIEHALVTADLDLLYIAPERLLTAHFLSLLERSQIALFAIDEAHCVSQWGHDFRPEYRQLT
VLHERWPHVPRIALTATADPPTQREIAERLDLSDAHHFISSFDRPNIRYTVVQKNNMRRQLQEFLGRHRNTAGIVYAMSR
RKTEEIAAYLCTQGYNALPYHAGLPVETRAKHQRCFLREEGIVMCATIAFGMGINKPDVRFVAQIDLPKSLEGYYQETGR
AGRDGEAAEAWMCYSLGDVVLLKQMIEQSEASEARKCVERAKLDHLLGYCESMQCRRQLLLSSFGETYPNPCGNCDNCLT
PATAWDATVLSQKALSCVYRTGQRFGVGHLIDILRGSKSQRILQLGHDQLSTYGIGSDVDERSWRSVFRQLVATHLLEVD
NEGYGGLRLTPSSRPVLKGERQVMMRRDQFIRERDRTGQRHGLSVLPEDLALFNALHRLRAQLAKEQNVPAFVIFHDSTL
RHIAEQRPTNLNALTKISGIGNNKLTRYGHQLIELVLAQG

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=626461 MRX62_RS11285 WP_060871855.1 2372970..2374772(-) (recQ) [Xylella fastidiosa subsp. pauca strain 50088]
ATGAGCACGTCTTCCGCCACCCAGACCGTTCTACAACGCGTCTTCGGCTACGACACCTTCCGTGGACCCCAGCAAGCCAT
CATTGAGCATGTCGCTGCCGGCCACGATGCCTTAGTCCTGATGCCCACCGGGGGCGGCAAATCATTGTGCTACCAAGTGC
CTGCGCTGCTGCGCAAAGGCATCGGCGTCGTCATCTCACCGCTGATTGCACTGATGCAAGACCAAGTCGAGACCCTACGT
CAGCTTGGCGTACGCGCCGCCTATCTCAACTCGACCCTAGATGCAACGCAGGCACAACGGATCGAACACGCTCTAGTCAC
CGCAGATCTAGACCTGCTGTATATCGCTCCGGAACGGTTACTCACTGCACACTTCTTATCGCTGCTGGAACGTAGCCAGA
TCGCTTTGTTCGCCATCGACGAAGCCCACTGCGTCTCACAGTGGGGACATGATTTCCGTCCCGAATACCGCCAACTCACC
GTACTTCATGAACGCTGGCCACACGTGCCTCGGATTGCACTGACCGCAACCGCCGACCCACCCACGCAACGCGAAATTGC
TGAGCGCCTTGACCTAAGCGATGCGCATCACTTCATCAGCTCATTCGACCGCCCCAACATCCGCTACACGGTCGTGCAGA
AAAACAATATGCGGCGCCAACTACAAGAGTTCCTCGGCCGCCATCGCAACACCGCAGGCATTGTCTACGCCATGTCACGG
CGCAAAACCGAAGAAATCGCCGCCTATCTGTGTACACAAGGCTACAACGCACTGCCTTACCATGCCGGCCTACCAGTCGA
AACACGTGCCAAACACCAACGCTGCTTTCTGCGTGAAGAAGGGATTGTGATGTGTGCCACCATCGCCTTCGGCATGGGCA
TCAACAAACCTGATGTCCGCTTTGTCGCCCAGATCGACCTCCCCAAATCACTGGAGGGTTATTACCAGGAAACCGGCCGC
GCCGGCCGCGATGGCGAAGCTGCAGAAGCATGGATGTGCTATAGCCTGGGAGACGTCGTACTGCTGAAACAAATGATCGA
ACAAAGCGAAGCCAGCGAAGCACGCAAGTGCGTAGAACGCGCCAAACTCGATCACCTGCTGGGCTACTGCGAATCAATGC
AATGCCGCCGCCAACTCTTACTATCCAGCTTCGGCGAAACCTATCCAAACCCCTGTGGCAACTGTGACAACTGCCTAACC
CCAGCCACCGCCTGGGATGCCACCGTGCTCTCCCAAAAGGCGTTAAGTTGCGTCTACCGCACTGGCCAGCGCTTCGGGGT
TGGCCACCTCATCGACATACTACGTGGCAGTAAGAGCCAAAGAATATTGCAACTGGGTCATGACCAACTCAGCACCTACG
GCATCGGCAGTGACGTGGATGAACGCAGCTGGCGCAGTGTCTTTCGCCAACTCGTCGCCACACACCTGTTGGAGGTCGAC
AACGAAGGCTACGGCGGCTTACGCCTGACCCCAAGCAGTCGTCCAGTCCTCAAAGGCGAACGCCAAGTCATGATGCGACG
GGATCAGTTCATCCGTGAACGCGACCGCACCGGCCAACGTCACGGACTATCGGTCCTCCCGGAAGATCTGGCACTCTTCA
ATGCCCTGCATCGCTTACGTGCACAACTCGCCAAAGAACAAAACGTGCCGGCATTCGTGATCTTCCATGACAGCACCTTG
CGCCATATTGCCGAGCAACGCCCTACCAACCTCAATGCACTGACCAAAATCAGCGGCATCGGCAACAACAAACTGACACG
CTATGGCCATCAGTTAATTGAACTCGTACTTGCGCAAGGGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(24-179)

HRDC domain (HRDC)

(530-596)

Helicase conserved C-terminal domain (Helicase_C)

(221-324)

RQC domain (RQC)

(403-509)

RecQ zinc-binding (RecQ_Zn_bind)

(337-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

38.111

98.833

0.377