Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   MRX62_RS11270 Genome accession   NZ_CP104027
Coordinates   2369616..2371007 (-) Length   463 a.a.
NCBI ID   WP_060871888.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. pauca strain 50088     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2364616..2376007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRX62_RS11250 (MRX62_11265) truA 2365305..2366075 (+) 771 WP_031336816.1 tRNA pseudouridine(38-40) synthase TruA -
  MRX62_RS11255 (MRX62_11270) - 2366072..2366734 (+) 663 WP_031336814.1 phosphoribosylanthranilate isomerase -
  MRX62_RS11260 (MRX62_11275) trpB 2367235..2368452 (+) 1218 WP_010893879.1 tryptophan synthase subunit beta -
  MRX62_RS11265 (MRX62_11280) trpA 2368578..2369384 (+) 807 WP_010893880.1 tryptophan synthase subunit alpha -
  MRX62_RS11270 (MRX62_11285) radA/sms 2369616..2371007 (-) 1392 WP_060871888.1 DNA repair protein RadA Machinery gene
  MRX62_RS11275 (MRX62_11290) - 2371205..2372170 (+) 966 WP_010893883.1 LLM class flavin-dependent oxidoreductase -
  MRX62_RS11280 (MRX62_11295) - 2372371..2372847 (-) 477 WP_010893884.1 hypothetical protein -
  MRX62_RS11285 (MRX62_11300) recQ 2372970..2374772 (-) 1803 WP_060871855.1 DNA helicase RecQ Machinery gene
  MRX62_RS11290 (MRX62_11305) - 2374952..2375494 (-) 543 WP_031336807.1 Dps family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 49528.94 Da        Isoelectric Point: 8.5874

>NTDB_id=626460 MRX62_RS11270 WP_060871888.1 2369616..2371007(-) (radA/sms) [Xylella fastidiosa subsp. pauca strain 50088]
MTKNAASKARIAYVCTECGTEYSKWQGQCTECSTWNCLSQITLGHAGTVKNPTMKHGNWTGQLDPPKITALKDVQHSEQA
RISTGIGEFDRVLGGGLVAGAVVLIGGDPGIGKSTLLLQALARMASTLPTLYVTGEESLTQVAGRAVRLDLPLEGLNALA
ETGIESILQHASSARPRLIVADSVQTLWTETLTAAPGSVSQVRESAAQLVRYAKKTGTTVFLVGHVTKEGGIAGPRVLEH
MVDAVLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMSEKGLKEVANPSAIFLSGRNSNQPGSCVMVTREGTRPLMIEVQ
ALVDTSPLSNPRRVTVGLEQNRLAMLLAVLHRHGNVLVGDQDVFINIVGGIRVQETAADLPVLLAIRSSLCNRALPEKTI
AFGEVGLSGEIRPVPNGEERLREAATHGFKRAIVPKANAPKSAIKDMQIIAVERLDQALEASY

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=626460 MRX62_RS11270 WP_060871888.1 2369616..2371007(-) (radA/sms) [Xylella fastidiosa subsp. pauca strain 50088]
ATGACCAAAAACGCCGCAAGCAAAGCCAGGATTGCCTATGTCTGCACTGAATGCGGCACCGAATACAGCAAATGGCAGGG
ACAGTGCACCGAATGCAGCACCTGGAATTGCTTAAGCCAAATCACCCTCGGACATGCAGGAACGGTCAAAAACCCAACCA
TGAAGCACGGCAATTGGACAGGTCAGCTCGACCCACCCAAGATCACCGCATTGAAGGACGTGCAACACAGCGAACAAGCA
CGCATCTCCACCGGCATTGGCGAGTTTGACCGCGTCCTAGGAGGCGGCCTGGTGGCAGGCGCGGTCGTCCTGATTGGTGG
CGATCCAGGTATCGGCAAATCCACACTGCTACTGCAAGCACTAGCACGGATGGCAAGCACCCTACCCACACTGTATGTGA
CGGGTGAAGAATCGCTGACACAGGTCGCCGGGCGTGCGGTGCGCCTGGATCTCCCCCTGGAGGGCTTAAACGCACTCGCA
GAAACCGGCATTGAATCAATCCTGCAACACGCCAGCAGCGCACGGCCACGACTGATTGTCGCCGACTCAGTACAGACCCT
ATGGACCGAAACACTGACCGCAGCACCCGGTTCAGTCAGCCAAGTACGAGAAAGCGCCGCACAGCTAGTGCGCTACGCCA
AAAAAACCGGTACAACCGTGTTCCTGGTTGGCCATGTCACCAAAGAAGGCGGCATCGCCGGCCCACGCGTACTGGAGCAC
ATGGTAGATGCCGTGCTGTATTTCGAAGGCGAAAGCGGTAGCCGTTTCCGTCTCCTGCGGGCATTCAAAAACCGCTTTGG
AGCAGTCAACGAACTAGGCGTCTTTGCGATGAGCGAAAAAGGCTTGAAAGAGGTCGCCAATCCATCAGCCATTTTTTTAT
CCGGCAGAAACAGCAACCAACCAGGCAGCTGTGTGATGGTCACCCGTGAAGGCACACGCCCGCTGATGATCGAAGTACAA
GCACTCGTCGATACCTCGCCACTGTCCAACCCACGCCGGGTTACCGTCGGGCTGGAACAAAATCGGCTAGCAATGCTGTT
AGCCGTGTTGCATCGTCACGGTAACGTCCTCGTTGGTGACCAAGACGTATTCATCAACATCGTTGGCGGCATCCGCGTTC
AAGAGACAGCCGCAGATCTACCTGTACTACTGGCGATCCGGTCCTCGTTATGCAACCGGGCGCTGCCGGAAAAGACCATC
GCCTTCGGCGAAGTAGGTTTATCCGGTGAAATCCGCCCGGTCCCCAACGGCGAAGAGCGCCTCAGAGAAGCAGCAACACA
CGGCTTTAAGCGCGCCATCGTGCCAAAAGCCAACGCACCCAAGAGTGCCATCAAGGACATGCAGATCATCGCCGTAGAAC
GCCTGGATCAGGCGCTGGAAGCAAGCTATTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(359-438)

AAA domain (AAA_25)

(91-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

45.415

98.92

0.449
  radA Streptococcus pneumoniae Rx1

42.702

99.136

0.423
  radA Streptococcus pneumoniae D39

42.702

99.136

0.423
  radA Streptococcus pneumoniae R6

42.702

99.136

0.423
  radA Streptococcus pneumoniae TIGR4

42.702

99.136

0.423
  radA Streptococcus mitis NCTC 12261

42.702

99.136

0.423
  radA Streptococcus mitis SK321

42.484

99.136

0.421