Detailed information NTG0626458

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: MRX62_RS10520
• Genome accession: NZ_CP104027
• Coordinates: 2184418..2185698 (+)
• Length: 426 a.a.
• NCBI ID: WP_010893699.1
• Uniprot ID: Q9PE40
• Organism: Xylella fastidiosa subsp. pauca strain 50088
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2179418..2190698

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MRX62_RS10500 (MRX62_10500)	-	2179865..2180326 (-)	462	WP_004086550.1	hypothetical protein	-
MRX62_RS10510 (MRX62_10510)	tig	2182234..2183529 (+)	1296	WP_010893697.1	trigger factor	-
MRX62_RS10515 (MRX62_10515)	clpP	2183664..2184290 (+)	627	WP_010893698.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
MRX62_RS10520 (MRX62_10520)	clpX	2184418..2185698 (+)	1281	WP_010893699.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
MRX62_RS10525 (MRX62_10525)	lon	2185851..2188322 (+)	2472	WP_042463054.1	endopeptidase La	-
MRX62_RS10530 (MRX62_10530)	-	2188543..2188827 (+)	285	WP_010893701.1	HU family DNA-binding protein	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 47076.07 Da
• Isoelectric Point: 5.4589

>NTDB_id=626458 MRX62_RS10520 WP_010893699.1 2184418..2185698(+) (clpX) [Xylella fastidiosa subsp. pauca strain 50088]
MSEDRPSRSGDGNKILYCSFCGKSQREVRKLIAGPSVFICDECVELCNDIIREELEEKSQSARSSLPKPKEILEVLDQYV
IGQQRAKRTLAVAVYNHYKRIESRHKNDDIELAKSNILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVERAQHGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTKNILFICGGAFAGLDKVIQQRCTEAGGIGFGVKVKSSESKRDVGKVLAGVEPEDLIKFGLIPEFVGRLPVVATLDELD
ESALVKILTEPKNAITKQFKKLFEMENVELEFRQDALSAVARKALKRKTGARGLRTIVELVLLDTMYELPSQEGISKVVV
DESVIENKSEPYLIYQTMPAKVASGE

Nucleotide

• Length: 1281 bp

>NTDB_id=626458 MRX62_RS10520 WP_010893699.1 2184418..2185698(+) (clpX) [Xylella fastidiosa subsp. pauca strain 50088]
ATGAGCGAAGACCGGCCAAGCCGTTCTGGTGACGGAAATAAGATTCTTTACTGCTCATTCTGCGGTAAAAGTCAGCGTGA
GGTTCGCAAGCTGATCGCAGGTCCAAGCGTATTCATTTGTGATGAATGCGTTGAGTTGTGTAACGATATTATTCGCGAGG
AACTGGAAGAGAAGTCGCAATCTGCGCGTTCCAGTTTGCCTAAGCCCAAGGAGATCCTTGAGGTTTTGGATCAGTATGTC
ATTGGCCAGCAGCGTGCTAAGAGGACTCTTGCTGTAGCCGTGTACAACCATTATAAACGGATCGAAAGTCGGCATAAGAA
TGACGACATCGAATTGGCTAAATCTAATATTTTGTTGGTTGGCCCAACAGGCTCGGGCAAGACGTTGCTTGCCGAGACAT
TGGCGCGTTTGCTGAATGTGCCTTTCACGATTGCCGATGCAACCACATTGACTGAGGCTGGCTATGTTGGTGAGGACGTG
GAGAATATCATTCAGAAGTTGTTACAGAAGTGTGATTACGACGTTGAAAGGGCGCAGCATGGGATCGTCTACATTGATGA
AATAGATAAGATTTCCCGTAAGAGTGAGAATCCATCAATTACCCGGGATGTTTCTGGTGAGGGTGTGCAGCAGGCATTGC
TGAAATTGATCGAAGGGACGGTTGCTTCTGTGCCTCCTCAGGGTGGTCGCAAGCATCCACAGCAGGAATTCCTGCAGGTC
GATACCAAAAATATTTTATTCATCTGTGGCGGTGCTTTTGCTGGTCTAGATAAGGTGATCCAACAGCGTTGCACTGAAGC
TGGTGGTATTGGCTTTGGTGTTAAGGTCAAAAGTTCAGAGAGTAAGCGCGATGTTGGTAAGGTACTAGCTGGTGTCGAGC
CGGAGGACCTGATTAAGTTTGGGTTAATCCCTGAATTCGTTGGGCGATTGCCAGTTGTAGCTACACTTGATGAGCTGGAT
GAGTCGGCTTTGGTTAAAATTTTAACCGAGCCAAAGAACGCTATTACAAAGCAGTTCAAAAAGCTGTTTGAGATGGAGAA
CGTAGAGTTGGAATTCCGTCAGGACGCGCTTTCAGCAGTGGCTAGGAAAGCTCTTAAGCGCAAGACTGGTGCGCGTGGTC
TCCGTACTATTGTTGAGTTGGTTCTGCTGGATACCATGTACGAACTTCCTTCTCAGGAAGGTATTAGTAAGGTTGTTGTC
GATGAATCGGTTATTGAAAATAAATCTGAGCCTTATCTGATTTATCAAACGATGCCTGCAAAGGTTGCTTCCGGCGAATG
A

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (114-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (16-53)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (319-396)

3D structure

• AlphaFold DB: Q9PE40

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.75	93.897	0.589
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.528	93.427	0.519