Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   MRX62_RS07880 Genome accession   NZ_CP104027
Coordinates   1640760..1642370 (+) Length   536 a.a.
NCBI ID   WP_060871720.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. pauca strain 50088     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1635760..1647370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRX62_RS07860 - 1637503..1637556 (+) 54 Protein_1529 ESPR-type extended signal peptide-containing protein -
  MRX62_RS07865 (MRX62_07855) - 1637563..1638180 (-) 618 WP_229926302.1 hypothetical protein -
  MRX62_RS07870 (MRX62_07860) sucD 1638447..1639319 (-) 873 WP_060871721.1 succinate--CoA ligase subunit alpha -
  MRX62_RS07875 (MRX62_07865) sucC 1639348..1640511 (-) 1164 WP_046418841.1 ADP-forming succinate--CoA ligase subunit beta -
  MRX62_RS07880 (MRX62_07870) pilS 1640760..1642370 (+) 1611 WP_060871720.1 PAS domain-containing sensor histidine kinase Regulator
  MRX62_RS07885 (MRX62_07875) - 1642556..1643968 (+) 1413 WP_060871719.1 sigma-54 dependent transcriptional regulator -
  MRX62_RS07890 (MRX62_07880) pilB 1644062..1645795 (-) 1734 WP_060871718.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MRX62_RS07895 (MRX62_07885) pilA/pilAI 1646636..1647103 (-) 468 WP_023907060.1 pilin Machinery gene

Sequence

Protein


Download         Length: 536 a.a.        Molecular weight: 59050.35 Da        Isoelectric Point: 6.0191

>NTDB_id=626440 MRX62_RS07880 WP_060871720.1 1640760..1642370(+) (pilS) [Xylella fastidiosa subsp. pauca strain 50088]
MLFSASLIHRIEFAPQRELYFLALYRILEAGLIAALVFSPVSILVDPESDPYLGTAVAVGYLLLATILLVWGRNERWFTP
LVFGSTVADILAATLAIHALPKASAGIAMMLLFNVAAAAILLRLRFSMILAWIAGVAMLVEYIWTVLSEGDSSRSLAELV
MFFTSYTAVAYMCHQAAQRARYSQALAEKRRAQIVNLAEINELIIRRMRTGVLVVDAANRIGLSNETAAALLGYDRQLVE
SDYDLATVAPELTMRLKCWGIGRHYEDTPLRLAPDQPEVQPRFVSLLADSGLTLIFLDDVSVVSRRAESLTLLALGRFSA
SLAHEIRNPLAAIKHASQLLEESSNLDKADQRLLEIILKQCQRTNGIVESVLGLARRERANPENLDLVGFVSRFVDEYRQ
TLSSEYDNLEIQTLHSTVQALVDPRHLYQILAVLTHNALRYGRFPDTPAQVRIEVVYTGGSVGINVLDQGPGIPDAAVLQ
LFQPFFTTSDHGTGLGLYIARELCNANQSNLEYVAIPGGGACFRITLPGPYALIPK

Nucleotide


Download         Length: 1611 bp        

>NTDB_id=626440 MRX62_RS07880 WP_060871720.1 1640760..1642370(+) (pilS) [Xylella fastidiosa subsp. pauca strain 50088]
GTGTTGTTCAGCGCTTCGCTGATTCATCGGATCGAATTTGCCCCGCAGCGTGAACTTTATTTTCTCGCCTTGTATCGGAT
ATTGGAGGCTGGATTGATCGCGGCCTTGGTGTTCAGTCCGGTGTCGATATTGGTGGATCCTGAGAGTGATCCATATTTGG
GCACGGCTGTCGCTGTCGGTTATTTGCTGTTGGCTACCATTTTGTTGGTCTGGGGTCGTAATGAGCGCTGGTTCACTCCA
TTAGTCTTTGGAAGTACTGTCGCCGACATTTTGGCTGCCACTCTTGCTATTCACGCCCTGCCTAAAGCCAGTGCCGGCAT
TGCGATGATGTTGTTGTTTAACGTTGCCGCCGCCGCCATCTTATTGCGGTTGCGTTTCAGCATGATCCTGGCTTGGATTG
CTGGGGTTGCGATGCTTGTGGAATACATCTGGACGGTACTCAGTGAGGGTGACTCATCACGTTCACTGGCCGAGCTCGTT
ATGTTTTTCACCAGCTACACTGCAGTGGCGTATATGTGTCATCAGGCCGCGCAGCGGGCCAGATATAGCCAAGCTCTGGC
TGAAAAGCGCCGTGCCCAGATAGTCAACTTGGCAGAGATCAACGAGCTGATTATCCGACGTATGCGGACGGGTGTGTTGG
TGGTGGATGCTGCTAATCGAATCGGTTTGAGTAACGAAACTGCAGCTGCGTTGCTGGGATACGACAGACAATTGGTCGAG
AGTGATTACGATCTCGCTACGGTTGCTCCGGAGTTGACAATGCGTCTGAAGTGTTGGGGTATCGGTCGACACTACGAAGA
TACTCCGTTGCGATTAGCGCCTGATCAACCTGAGGTCCAGCCTCGCTTTGTGAGTCTGCTTGCCGACAGTGGATTGACAT
TAATTTTCCTTGATGATGTCAGTGTTGTTTCACGCCGTGCCGAATCGTTGACTTTGTTGGCGCTTGGACGTTTTTCAGCC
AGTTTGGCACACGAGATTCGTAATCCTTTGGCTGCAATCAAACATGCATCGCAGCTCTTGGAAGAGTCCTCCAATCTTGA
CAAAGCCGATCAACGGCTGTTGGAGATTATTCTAAAGCAGTGCCAGCGGACCAATGGGATTGTGGAGAGCGTGCTTGGCT
TGGCAAGACGCGAACGTGCTAACCCGGAAAATTTGGATTTGGTCGGTTTCGTGTCCCGATTTGTCGATGAATACCGCCAG
ACATTGTCAAGCGAGTATGACAATCTGGAAATACAAACGTTGCACAGTACCGTGCAGGCACTGGTGGATCCACGCCACTT
GTACCAGATCCTCGCTGTCCTTACCCACAACGCGTTGCGTTATGGCCGCTTTCCGGATACTCCAGCACAGGTGCGTATTG
AGGTGGTATATACCGGAGGCAGCGTGGGGATCAATGTCCTTGATCAGGGGCCTGGTATACCCGATGCGGCTGTTTTGCAG
CTTTTTCAGCCTTTTTTCACTACTTCCGACCATGGTACGGGGCTTGGTCTATACATCGCTCGTGAGCTGTGCAACGCGAA
TCAATCCAATCTTGAGTACGTGGCCATTCCAGGGGGCGGGGCTTGTTTCCGGATTACTTTGCCGGGTCCGTATGCATTGA
TTCCGAAGTGA

Domains

Predicted by InterProScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(314-378)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(423-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

37.452

98.134

0.368