Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   LJN47_RS02570 Genome accession   NZ_CP086760
Coordinates   540304..540708 (+) Length   134 a.a.
NCBI ID   WP_229930042.1    Uniprot ID   -
Organism   Helicobacter pylori strain 3192     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 535304..545708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJN47_RS02535 (LJN47_02535) - 535481..536419 (-) 939 WP_229930038.1 tetraacyldisaccharide 4'-kinase -
  LJN47_RS02540 (LJN47_02540) - 536416..537198 (-) 783 WP_229930039.1 NAD+ synthase -
  LJN47_RS02550 (LJN47_02550) ilvC 537447..538439 (+) 993 WP_229930040.1 ketol-acid reductoisomerase -
  LJN47_RS02555 (LJN47_02555) minD 538464..539270 (+) 807 WP_075707746.1 septum site-determining protein MinD -
  LJN47_RS02560 (LJN47_02560) minE 539267..539500 (+) 234 WP_000051425.1 cell division topological specificity factor MinE -
  LJN47_RS02565 (LJN47_02565) dprA 539507..540307 (+) 801 WP_229930041.1 DNA-processing protein DprA Machinery gene
  LJN47_RS02570 (LJN47_02570) dprB 540304..540708 (+) 405 WP_229930042.1 Holliday junction resolvase RuvX Machinery gene
  LJN47_RS02575 (LJN47_02575) - 540989..541456 (+) 468 WP_220946841.1 tetratricopeptide repeat protein -
  LJN47_RS02580 (LJN47_02580) - 541642..541980 (+) 339 WP_140547863.1 hypothetical protein -
  LJN47_RS02585 (LJN47_02585) - 541964..542524 (+) 561 WP_127977393.1 hypothetical protein -
  LJN47_RS02590 (LJN47_02590) - 542637..543518 (-) 882 WP_229930043.1 RluA family pseudouridine synthase -
  LJN47_RS02595 (LJN47_02595) recJ 543518..545068 (-) 1551 WP_229930044.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15248.63 Da        Isoelectric Point: 8.7257

>NTDB_id=626287 LJN47_RS02570 WP_229930042.1 540304..540708(+) (dprB) [Helicobacter pylori strain 3192]
MILACDVGLKRIGIAALLNGVILPLEAILRRNKNQASRDLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVDFRGE
IVFINEDNSSIEAYENLEHLGRKNKRLATKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=626287 LJN47_RS02570 WP_229930042.1 540304..540708(+) (dprB) [Helicobacter pylori strain 3192]
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCGCAACAAAAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGAGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACCCACGCCCGCATTGAGCATTTCATCAAGCTTGTAGATTTTAGGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGAAAATTTAGAGCATTTGGGTAGGAAAAACAAGAGGCT
CGCTACCAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.284

100

0.933