Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LJN47_RS00285 Genome accession   NZ_CP086760
Coordinates   64836..65411 (+) Length   191 a.a.
NCBI ID   WP_229929795.1    Uniprot ID   -
Organism   Helicobacter pylori strain 3192     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 60527..73177 64836..65411 within 0


Gene organization within MGE regions


Location: 60527..73177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJN47_RS00260 (LJN47_00260) uvrD 60527..62572 (+) 2046 WP_220947086.1 DNA helicase UvrD -
  LJN47_RS00265 (LJN47_00265) flgA 62569..63225 (+) 657 WP_229929791.1 flagellar basal body P-ring formation chaperone FlgA -
  LJN47_RS00270 (LJN47_00270) - 63235..63798 (+) 564 WP_229929792.1 UbiX family flavin prenyltransferase -
  LJN47_RS00275 (LJN47_00275) coaD 63798..64271 (+) 474 WP_229929793.1 pantetheine-phosphate adenylyltransferase -
  LJN47_RS00280 (LJN47_00280) tmk 64273..64848 (+) 576 WP_229929794.1 dTMP kinase -
  LJN47_RS00285 (LJN47_00285) comFC 64836..65411 (+) 576 WP_229929795.1 ComF family protein Machinery gene
  LJN47_RS00290 (LJN47_00290) - 65433..66893 (-) 1461 WP_229929796.1 hypothetical protein -
  LJN47_RS00295 (LJN47_00295) - 66956..68095 (-) 1140 WP_229929797.1 DNA methyltransferase -
  LJN47_RS00300 (LJN47_00300) - 68099..69106 (-) 1008 WP_229929798.1 DNA adenine methylase -
  LJN47_RS07860 - 69103..69342 (-) 240 WP_000777864.1 helix-turn-helix domain-containing protein -
  LJN47_RS00305 (LJN47_00305) - 69254..69529 (-) 276 WP_229929799.1 hypothetical protein -
  LJN47_RS00310 (LJN47_00310) polA 69635..72316 (+) 2682 WP_229929800.1 DNA polymerase I -
  LJN47_RS00315 (LJN47_00315) - 72431..73177 (+) 747 WP_229929801.1 outer membrane protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21355.08 Da        Isoelectric Point: 9.6954

>NTDB_id=626273 LJN47_RS00285 WP_229929795.1 64836..65411(+) (comFC) [Helicobacter pylori strain 3192]
MRCLTCLKLSFKPLCKNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILKEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRATNAVSYAGKSLEFRTNNPRNFTFKGDKSLDYFLLDDII
TTGTTLKEALKYLKTLNIKVHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=626273 LJN47_RS00285 WP_229929795.1 64836..65411(+) (comFC) [Helicobacter pylori strain 3192]
ATGCGTTGTTTGACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCAAAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGTGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAGATCCTAAAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTACTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCACCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATTAAAGTGCACTTTGCAATCGCGCTTTG
CAGCGCAGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

94.764

100

0.948
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.788

100

0.372