Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LM507_RS08330 Genome accession   NZ_CP086726
Coordinates   1737630..1738676 (+) Length   348 a.a.
NCBI ID   WP_002354860.1    Uniprot ID   A0AAV3GJZ4
Organism   Enterococcus faecalis strain E533     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1732630..1743676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LM507_RS08305 (LM507_08305) - 1733215..1733598 (+) 384 WP_002354850.1 YccF domain-containing protein -
  LM507_RS08310 (LM507_08310) - 1733687..1734112 (+) 426 WP_002383201.1 Rrf2 family transcriptional regulator -
  LM507_RS08315 (LM507_08315) - 1734171..1734800 (+) 630 WP_002354854.1 NAD(P)-dependent oxidoreductase -
  LM507_RS08320 (LM507_08320) - 1734876..1736081 (-) 1206 WP_002359001.1 hypothetical protein -
  LM507_RS08325 (LM507_08325) cinA 1736272..1737516 (+) 1245 WP_010820333.1 competence/damage-inducible protein A Machinery gene
  LM507_RS08330 (LM507_08330) recA 1737630..1738676 (+) 1047 WP_002354860.1 recombinase RecA Machinery gene
  LM507_RS08335 (LM507_08335) rny 1739073..1740629 (+) 1557 WP_002354863.1 ribonuclease Y -
  LM507_RS08340 (LM507_08340) - 1740789..1741586 (+) 798 WP_002354864.1 TIGR00282 family metallophosphoesterase -
  LM507_RS08345 (LM507_08345) - 1741660..1742046 (+) 387 WP_002359008.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37409.63 Da        Isoelectric Point: 4.9076

>NTDB_id=626151 LM507_RS08330 WP_002354860.1 1737630..1738676(+) (recA) [Enterococcus faecalis strain E533]
MADDRKVALDAALKKIEKNFGKGSIMKLGEKADQKISTIPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVSLHAIA
EVQRNGGTAAFIDAEHALDPQYAEKLGVNIDELLLSQPDTGEQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGA
SHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEKDLISKSGAWYGYKEERIGQGRENAKQYMADHPEMMAEVSK
LVRDAYGIGDGSTITEEAEGQEELPLDE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=626151 LM507_RS08330 WP_002354860.1 1737630..1738676(+) (recA) [Enterococcus faecalis strain E533]
TTGGCAGATGATCGTAAAGTGGCTTTAGATGCCGCACTGAAAAAAATTGAAAAGAACTTTGGGAAAGGCTCTATTATGAA
ATTAGGCGAAAAAGCTGATCAAAAAATTTCAACTATCCCTAGTGGTTCTTTAGCGTTAGATGTTGCATTGGGCGTAGGTG
GGTATCCACGTGGCCGAATTATTGAAGTATATGGTCCTGAGAGTTCAGGTAAAACAACTGTTTCTTTACACGCAATTGCA
GAAGTGCAACGAAATGGTGGAACAGCCGCTTTTATCGATGCTGAGCATGCATTGGATCCTCAATATGCGGAGAAACTAGG
CGTTAACATTGATGAATTACTTTTATCTCAACCAGATACGGGCGAGCAAGGCTTAGAGATTGCCGATGCCTTAGTTTCAA
GTGGTGCGATTGACATCGTTGTCATCGACTCGGTTGCTGCGTTAGTTCCTCGTGCAGAGATTGATGGTGAGATGGGAGCG
AGCCATGTCGGCTTACAAGCTCGACTAATGTCTCAAGCACTACGTAAATTATCAGGCTCAATTAATAAGACAAAAACAAT
TGCTATTTTCATTAACCAAATTCGTGAAAAAGTTGGCGTGATGTTCGGAAATCCTGAAACAACTCCTGGTGGACGTGCAT
TGAAATTCTACGCAACGGTTCGTCTAGAAGTCCGTCGTGCAGAACAGTTAAAACAAGGAACAGACATCGTCGGTAACCGC
ACAAAAATTAAAGTCGTTAAAAACAAAGTGGCGCCACCATTTAAAGTGGCAGAAGTTGATATCATGTATGGCCAAGGGAT
TTCCCAAGAAGGCGAATTACTAGATATGGCTGTGGAAAAAGACCTTATCAGCAAAAGTGGTGCTTGGTATGGCTACAAAG
AAGAACGAATTGGCCAAGGCCGTGAAAATGCCAAACAATACATGGCGGATCATCCTGAAATGATGGCAGAAGTGTCTAAA
TTGGTCCGTGATGCATATGGCATCGGTGACGGTTCAACCATTACAGAAGAAGCAGAAGGTCAAGAAGAATTACCCTTAGA
TGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

80.793

94.253

0.761
  recA Bacillus subtilis subsp. subtilis str. 168

77.039

95.115

0.733
  recA Streptococcus pneumoniae D39

68.333

100

0.707
  recA Streptococcus pneumoniae R6

68.333

100

0.707
  recA Streptococcus pneumoniae TIGR4

68.333

100

0.707
  recA Streptococcus pneumoniae Rx1

68.333

100

0.707
  recA Streptococcus mitis SK321

71.217

96.839

0.69
  recA Streptococcus mitis NCTC 12261

71.217

96.839

0.69
  recA Streptococcus mutans UA159

66.761

100

0.675
  recA Streptococcus pyogenes NZ131

70.695

95.115

0.672
  recA Lactococcus lactis subsp. cremoris KW2

68.06

96.264

0.655
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.805

94.253

0.592
  recA Neisseria gonorrhoeae MS11

62.006

94.54

0.586
  recA Neisseria gonorrhoeae MS11

62.006

94.54

0.586
  recA Neisseria gonorrhoeae strain FA1090

62.006

94.54

0.586
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.601

98.563

0.578
  recA Ralstonia pseudosolanacearum GMI1000

61.28

94.253

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.606

94.828

0.575
  recA Vibrio cholerae strain A1552

61.728

93.103

0.575
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.728

93.103

0.575
  recA Acinetobacter baumannii D1279779

61.111

93.103

0.569
  recA Pseudomonas stutzeri DSM 10701

60.991

92.816

0.566
  recA Glaesserella parasuis strain SC1401

58.631

96.552

0.566
  recA Acinetobacter baylyi ADP1

60.494

93.103

0.563
  recA Helicobacter pylori strain NCTC11637

59.202

93.678

0.555
  recA Helicobacter pylori 26695

59.202

93.678

0.555