Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LN243_RS08625 Genome accession   NZ_CP086659
Coordinates   1761750..1762622 (-) Length   290 a.a.
NCBI ID   WP_002436358.1    Uniprot ID   -
Organism   Staphylococcus capitis strain XZ03     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1716282..1779966 1761750..1762622 within 0


Gene organization within MGE regions


Location: 1716282..1779966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LN243_RS08445 recA 1717842..1718894 (-) 1053 WP_002437037.1 recombinase RecA Machinery gene
  LN243_RS08450 - 1719063..1720211 (-) 1149 WP_030064817.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  LN243_RS08455 pgsA 1720353..1720934 (-) 582 WP_002469863.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LN243_RS08460 - 1720962..1721354 (-) 393 WP_030064815.1 helix-turn-helix domain-containing protein -
  LN243_RS08465 - 1721373..1722200 (-) 828 WP_030064813.1 YmfK family protein -
  LN243_RS08470 ymfI 1722358..1723065 (-) 708 WP_023350378.1 elongation factor P 5-aminopentanone reductase -
  LN243_RS08475 yfmH 1723065..1724351 (-) 1287 WP_030064811.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LN243_RS08480 yfmF 1724351..1725625 (-) 1275 WP_030064809.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  LN243_RS08485 - 1725667..1726377 (-) 711 WP_002436349.1 GntR family transcriptional regulator -
  LN243_RS12680 - 1726380..1727840 (-) 1461 Protein_1643 DNA translocase FtsK -
  LN243_RS12685 - 1727916..1728800 (-) 885 Protein_1644 DNA translocase FtsK 4TM domain-containing protein -
  LN243_RS08495 rnjB 1729058..1730731 (-) 1674 WP_002469869.1 ribonuclease J2 -
  LN243_RS08500 pnp 1730965..1733064 (-) 2100 WP_030064806.1 polyribonucleotide nucleotidyltransferase -
  LN243_RS08505 rpsO 1733382..1733651 (-) 270 WP_002436359.1 30S ribosomal protein S15 -
  LN243_RS08510 ribF 1733773..1734744 (-) 972 WP_002436322.1 riboflavin biosynthesis protein RibF -
  LN243_RS08515 truB 1734760..1735677 (-) 918 WP_002436304.1 tRNA pseudouridine(55) synthase TruB -
  LN243_RS08520 rbfA 1735826..1736176 (-) 351 WP_002436301.1 30S ribosome-binding factor RbfA -
  LN243_RS08525 infB 1736333..1738498 (-) 2166 WP_030064804.1 translation initiation factor IF-2 -
  LN243_RS08530 - 1738503..1738820 (-) 318 WP_030064802.1 L7Ae/L30e/S12e/Gadd45 family ribosomal protein -
  LN243_RS08535 rnpM 1738817..1739101 (-) 285 WP_002436310.1 RNase P modulator RnpM -
  LN243_RS08540 nusA 1739118..1740341 (-) 1224 WP_002436342.1 transcription termination factor NusA -
  LN243_RS08545 rimP 1740362..1740829 (-) 468 WP_002436317.1 ribosome maturation factor RimP -
  LN243_RS08550 - 1741055..1745365 (-) 4311 WP_096389449.1 PolC-type DNA polymerase III -
  LN243_RS08555 - 1745621..1747324 (-) 1704 WP_030064798.1 proline--tRNA ligase -
  LN243_RS08560 rseP 1747344..1748630 (-) 1287 WP_030064796.1 RIP metalloprotease RseP -
  LN243_RS08565 - 1748870..1749652 (-) 783 WP_002436308.1 phosphatidate cytidylyltransferase -
  LN243_RS08570 - 1749656..1750426 (-) 771 WP_002436351.1 isoprenyl transferase -
  LN243_RS08575 frr 1750707..1751261 (-) 555 WP_002436295.1 ribosome recycling factor -
  LN243_RS08580 pyrH 1751279..1752001 (-) 723 WP_002436299.1 UMP kinase -
  LN243_RS08585 tsf 1752138..1753016 (-) 879 WP_030064793.1 translation elongation factor Ts -
  LN243_RS08590 rpsB 1753167..1753955 (-) 789 WP_002436327.1 30S ribosomal protein S2 -
  LN243_RS08595 codY 1754208..1754981 (-) 774 WP_002436324.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  LN243_RS08600 hslU 1755004..1756407 (-) 1404 WP_002436320.1 ATP-dependent protease ATPase subunit HslU -
  LN243_RS08605 hslV 1756491..1757033 (-) 543 WP_023350393.1 ATP-dependent protease subunit HslV -
  LN243_RS08610 xerC 1757037..1757927 (-) 891 WP_023350394.1 tyrosine recombinase XerC -
  LN243_RS08615 trmFO 1758164..1759471 (-) 1308 WP_030064791.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LN243_RS08620 topA 1759497..1761572 (-) 2076 WP_030064789.1 type I DNA topoisomerase -
  LN243_RS08625 dprA 1761750..1762622 (-) 873 WP_002436358.1 DNA-processing protein DprA Machinery gene
  LN243_RS08630 sucD 1762848..1763756 (-) 909 WP_002436344.1 succinate--CoA ligase subunit alpha -
  LN243_RS08635 sucC 1763778..1764944 (-) 1167 WP_002436291.1 ADP-forming succinate--CoA ligase subunit beta -
  LN243_RS08640 - 1765052..1765822 (-) 771 WP_030064786.1 ribonuclease HII -
  LN243_RS08645 ylqF 1765806..1766689 (-) 884 Protein_1675 ribosome biogenesis GTPase YlqF -
  LN243_RS08650 - 1766969..1769569 (+) 2601 WP_030064782.1 YfhO family protein -
  LN243_RS08655 - 1769562..1772174 (+) 2613 WP_030064780.1 YfhO family protein -
  LN243_RS08660 - 1772614..1772853 (+) 240 WP_228116314.1 hypothetical protein -
  LN243_RS08665 - 1772893..1773231 (+) 339 WP_030064776.1 hypothetical protein -
  LN243_RS08670 rplS 1773808..1774158 (-) 351 WP_002436293.1 50S ribosomal protein L19 -
  LN243_RS08675 trmD 1774264..1775001 (-) 738 WP_030064770.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LN243_RS08680 rimM 1775001..1775504 (-) 504 WP_030064768.1 ribosome maturation factor RimM -
  LN243_RS08685 rpsP 1775767..1776042 (-) 276 WP_002453071.1 30S ribosomal protein S16 -
  LN243_RS08690 ffh 1776466..1777833 (-) 1368 WP_002435148.1 signal recognition particle protein -
  LN243_RS08695 - 1777863..1778195 (-) 333 WP_002435170.1 putative DNA-binding protein -
  LN243_RS08700 ftsY 1778182..1779441 (-) 1260 WP_030064764.1 signal recognition particle-docking protein FtsY -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33396.67 Da        Isoelectric Point: 9.6697

>NTDB_id=626030 LN243_RS08625 WP_002436358.1 1761750..1762622(-) (dprA) [Staphylococcus capitis strain XZ03]
MIQHTLLKLYWANFATTQVHQFIKEYPEVISENALIQNEMIEDWAKRQTSSTVRRKLSLFKSLNTEVIFQEMTKMNLKYL
TYFDKHYPQLLKEIYDFPYVIFYKGNKQLFNCPHTLAVIGSRKSTLYTTQALEYLFPSFKSLKMTIISGLAYGADSIAHQ
VALKNKLPTIGVLGFGHSYHYPKSSLKTRENIERKGLVISEYPPHSPITRYKFPERNRLISGLARGLLITEAEKISGSQI
TVDCALEQNRNVYVLPGSMFNPMTKSNLLRLQEGAQVVLDESSILSDYIF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=626030 LN243_RS08625 WP_002436358.1 1761750..1762622(-) (dprA) [Staphylococcus capitis strain XZ03]
GTGATTCAACACACTTTATTGAAGCTCTATTGGGCTAATTTCGCCACAACGCAAGTTCATCAATTTATTAAAGAATATCC
AGAAGTTATTTCAGAAAATGCACTAATTCAAAATGAGATGATTGAGGATTGGGCTAAAAGACAAACCTCATCCACAGTCA
GGAGAAAATTGAGCTTATTTAAATCACTTAATACAGAAGTTATATTTCAAGAAATGACTAAAATGAACCTCAAATATTTA
ACTTACTTTGACAAACATTATCCTCAATTACTTAAAGAAATTTATGATTTCCCATATGTAATTTTTTATAAAGGAAATAA
ACAACTATTTAATTGTCCTCATACTTTAGCTGTTATAGGCTCAAGAAAGTCAACTTTATATACAACTCAAGCTTTGGAAT
ACCTTTTCCCATCATTTAAATCACTGAAAATGACGATTATTTCCGGATTAGCATATGGTGCAGATAGTATAGCTCACCAA
GTCGCACTAAAAAATAAACTTCCAACAATAGGTGTTCTTGGCTTCGGCCATTCATATCATTATCCTAAATCATCTTTAAA
GACAAGAGAGAATATCGAACGAAAAGGACTAGTTATAAGTGAGTATCCACCTCATTCTCCCATAACCAGATATAAATTTC
CTGAAAGAAATAGATTGATTAGTGGACTCGCTCGGGGTCTATTAATTACAGAAGCAGAGAAAATAAGCGGTAGTCAAATA
ACAGTAGACTGCGCTTTAGAACAAAACCGGAATGTATATGTTTTACCAGGATCAATGTTTAATCCTATGACCAAAAGTAA
TTTACTTAGACTTCAAGAGGGGGCACAAGTCGTTTTAGATGAAAGTAGTATTCTTTCAGACTACATTTTCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

59.028

99.31

0.586
  dprA Staphylococcus aureus MW2

59.028

99.31

0.586