Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   NYR17_RS09105 Genome accession   NZ_CP103950
Coordinates   1922978..1924738 (+) Length   586 a.a.
NCBI ID   WP_302505391.1    Uniprot ID   -
Organism   Riemerella columbina strain TH22     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1917978..1929738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR17_RS09080 (NYR17_09080) - 1918872..1919390 (-) 519 WP_302505386.1 NUDIX domain-containing protein -
  NYR17_RS09085 (NYR17_09085) xerD 1919402..1920304 (-) 903 WP_302505387.1 site-specific tyrosine recombinase XerD -
  NYR17_RS09090 (NYR17_09090) - 1920306..1920740 (-) 435 WP_302505388.1 dCMP deaminase family protein -
  NYR17_RS09095 (NYR17_09095) - 1920745..1921512 (-) 768 WP_302505389.1 enoyl-CoA hydratase/isomerase family protein -
  NYR17_RS09100 (NYR17_09100) hutI 1921553..1922785 (-) 1233 WP_302505390.1 imidazolonepropionase -
  NYR17_RS09105 (NYR17_09105) comEC 1922978..1924738 (+) 1761 WP_302505391.1 ComEC/Rec2 family competence protein Machinery gene
  NYR17_RS09110 (NYR17_09110) - 1924902..1925579 (+) 678 WP_302505392.1 succinate dehydrogenase cytochrome b subunit -
  NYR17_RS09115 (NYR17_09115) - 1925633..1927645 (+) 2013 WP_302505393.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  NYR17_RS09120 (NYR17_09120) - 1927665..1928435 (+) 771 WP_302505394.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 67524.60 Da        Isoelectric Point: 9.7217

>NTDB_id=626008 NYR17_RS09105 WP_302505391.1 1922978..1924738(+) (comEC) [Riemerella columbina strain TH22]
MKKYLSFYLWIGFSIGIALEDYFVFSEVWLYLFVGLGLASLGALRLKMHYKWLFLFLFFVNVGIVAHFFRLQQERVELPE
SAEITLKLENILGANAKHQRYIIKGFYQNQNFKAVLRLPKEAPPLDYQHYYRSRCFISKLKPPAHSYQFDYAAYQARQGV
FYALYPQEPLQQAVTPSLSLADRLKQWRLNFINKINQSALNSEARQFLKSIILADKTEMSEATIADFRKSGLAHLLAISG
THIGIIFGFLLGLFTFIFSAQQRKWNIIISLILVWCFGIFIGGSVSVIRACIMLSIYFYFVLHQRLPSTPDAVALAGFII
LILDSRQLLNVGFQLSFAAVLGIYWLYTPIFKYLPRSDYRLLNLFSSTIAITLAAQLGTLPLVLYYFHQYSVVSLLANIV
VIPVMGLVIIFSFVMSLILALGVSWSWLISLYNMVVETLLSVVHFFGNVEWGASDTIDFQGIEVLLLSALFYGLHFLLKR
LYWFNIRNFIILYCSFGLVRMGLDYLALQNTEVLWHQHQKAALASIKVKNTVYFWVPENANLSEIERYIIKPYLVSRRCG
HYQIKTLPPKATAIRYGDRTYPITQE

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=626008 NYR17_RS09105 WP_302505391.1 1922978..1924738(+) (comEC) [Riemerella columbina strain TH22]
ATGAAAAAGTATCTTTCTTTTTATCTGTGGATAGGATTTTCTATCGGTATAGCTTTAGAAGATTATTTTGTATTCTCGGA
GGTCTGGCTTTATCTTTTTGTAGGTTTGGGCTTGGCGAGCCTTGGTGCGTTACGGCTTAAAATGCATTATAAATGGCTTT
TTCTCTTTTTATTTTTTGTTAATGTGGGGATTGTGGCTCATTTTTTTCGGTTGCAACAAGAGCGAGTTGAGCTTCCAGAA
TCTGCGGAAATCACACTAAAATTAGAAAACATACTCGGCGCGAATGCCAAACACCAGCGCTATATCATCAAAGGTTTTTA
TCAAAATCAGAATTTTAAAGCCGTGCTTAGGCTTCCAAAAGAGGCGCCACCTTTGGATTATCAGCATTATTACCGCAGCC
GCTGTTTTATTTCAAAGTTGAAACCGCCAGCACATTCGTATCAATTTGATTATGCCGCCTACCAAGCTCGGCAAGGTGTT
TTCTACGCTCTCTATCCACAAGAACCGCTCCAACAAGCCGTTACACCTTCTTTAAGTTTAGCCGACCGCCTCAAACAATG
GCGACTGAATTTCATCAATAAAATCAACCAAAGCGCCCTGAACAGCGAGGCGAGGCAGTTTTTGAAAAGCATTATTTTAG
CCGACAAAACCGAAATGAGCGAAGCGACCATCGCGGATTTTCGCAAGAGTGGTTTAGCGCATTTATTAGCAATTTCTGGC
ACACATATCGGGATTATTTTTGGATTTTTATTGGGGCTGTTCACTTTTATTTTTTCTGCTCAACAGCGAAAATGGAATAT
CATCATCAGCCTGATTTTGGTGTGGTGTTTTGGCATTTTCATCGGAGGTAGCGTTTCCGTGATTCGGGCTTGTATTATGC
TTTCTATTTATTTTTATTTTGTGCTCCACCAGCGGTTGCCCAGCACGCCAGATGCCGTGGCTTTAGCTGGTTTTATCATT
TTAATTTTGGACAGTCGGCAGTTGCTTAATGTGGGTTTTCAGCTCAGCTTTGCTGCGGTATTAGGGATTTATTGGCTATA
CACGCCCATTTTTAAATATTTGCCACGCAGCGATTACCGATTACTCAACCTTTTTTCCAGCACGATCGCCATTACTTTAG
CCGCGCAGTTGGGCACACTGCCGCTGGTACTTTATTATTTTCATCAATATTCGGTGGTGTCTTTGTTGGCGAACATTGTG
GTGATTCCTGTGATGGGCTTAGTGATTATTTTCTCTTTTGTGATGAGCCTTATTCTGGCTTTGGGAGTTTCGTGGTCTTG
GCTGATTTCACTTTATAATATGGTGGTGGAAACCTTGCTCAGCGTGGTTCATTTTTTCGGAAATGTAGAATGGGGCGCCT
CGGATACCATTGATTTTCAAGGGATAGAAGTGCTTTTGTTATCGGCATTGTTCTACGGTCTACACTTTCTTTTAAAGCGA
CTTTATTGGTTTAATATTAGAAATTTTATTATCCTCTATTGTAGTTTTGGTTTGGTCCGTATGGGTTTGGATTATCTGGC
GCTCCAAAACACAGAAGTGCTCTGGCATCAACATCAAAAAGCCGCCTTGGCATCCATAAAGGTGAAAAATACGGTTTATT
TTTGGGTGCCTGAAAATGCTAACCTCTCAGAAATAGAGCGTTACATCATTAAGCCTTACTTGGTTTCGCGGCGCTGTGGG
CATTATCAAATCAAAACTTTACCGCCAAAAGCCACCGCTATTCGGTATGGAGATCGGACTTATCCCATAACTCAAGAATA
G

Domains

Predicted by InterProScan.

Domain of unknown function (DUF4131) (DUF4131)

(28-169)

Competence protein (Competence)

(211-477)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Riemerella anatipestifer ATCC 11845 = DSM 15868

41.582

100

0.421