Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   NYR17_RS09060 Genome accession   NZ_CP103950
Coordinates   1913948..1915756 (-) Length   602 a.a.
NCBI ID   WP_302505383.1    Uniprot ID   -
Organism   Riemerella columbina strain TH22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1908948..1920756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR17_RS09035 (NYR17_09035) raiA 1910332..1910622 (-) 291 WP_302505380.1 ribosome-associated translation inhibitor RaiA -
  NYR17_RS09040 (NYR17_09040) - 1910651..1911532 (-) 882 WP_302505381.1 tyrosine-type recombinase/integrase -
  NYR17_RS09045 (NYR17_09045) rpsU 1911616..1911813 (-) 198 WP_018675320.1 30S ribosomal protein S21 -
  NYR17_RS09050 (NYR17_09050) - 1911942..1912841 (+) 900 WP_302505382.1 DMT family transporter -
  NYR17_RS09055 (NYR17_09055) - 1912854..1913930 (+) 1077 WP_302507062.1 PorV/PorQ family protein -
  NYR17_RS09060 (NYR17_09060) uvrC 1913948..1915756 (-) 1809 WP_302505383.1 excinuclease ABC subunit UvrC Machinery gene
  NYR17_RS09065 (NYR17_09065) - 1915808..1916971 (-) 1164 WP_302505384.1 GlmU family protein -
  NYR17_RS09070 (NYR17_09070) - 1917056..1917310 (-) 255 WP_026315563.1 type B 50S ribosomal protein L31 -
  NYR17_RS09075 (NYR17_09075) - 1917481..1918875 (+) 1395 WP_302505385.1 hypothetical protein -
  NYR17_RS09080 (NYR17_09080) - 1918872..1919390 (-) 519 WP_302505386.1 NUDIX domain-containing protein -
  NYR17_RS09085 (NYR17_09085) xerD 1919402..1920304 (-) 903 WP_302505387.1 site-specific tyrosine recombinase XerD -
  NYR17_RS09090 (NYR17_09090) - 1920306..1920740 (-) 435 WP_302505388.1 dCMP deaminase family protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 69828.93 Da        Isoelectric Point: 9.2484

>NTDB_id=626007 NYR17_RS09060 WP_302505383.1 1913948..1915756(-) (uvrC) [Riemerella columbina strain TH22]
MNETLELQLKTLPSDPGVYRYYDKEGQLLYVGKAKNLKNRVMTYFTKNQVGYKTRIMVRKIHRLEVTVVPSEYDALLLEN
NLIKEHQPFYNVMMKDDKSFPWLCIKNEDFPRIFLTRKRIKDGSEYYGPYAKVRPARVLLETIKALYKIRTCSLNLSPEK
IEQSKYKVCLEYHIKNCEGPCEGLETEAEYDKKIEAIRGMIKGDFGLAKRHLEEEMMHWASLLEFEKAQMVKEKLEMLED
YQVKHTVVSPTIDDVDVFGMCSDESAAYINYFKIRNGNIVQSYTSEFRKKLDETDEDILEEAIIEMRNKFQSRSKEILLP
FHLSTEIPKVKLIVPKLGDKKRIVELSEKNAKEYRLEKLKQIQIVDPERHTNRIMAEMQKLLRMPVEPRYIEGFDNSNIQ
GTNPVSACVVFKNGKPSKQDYRIFHIKTVEGPNDFASMEEVIYRRYSRLLQEGAPLPQLILIDGGKGQLSSAVKSLKRLG
LYGEITIIGIAKRLEELFFPEDPIPLYLDKTSETLKILQQVRDEAHRFGVKHHRTRRKNSTIKSELEDIPGVGPKSIALL
LQKLKSVKRIRETSKATLEEILGTAKGAAVWAYFNSDESSKF

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=626007 NYR17_RS09060 WP_302505383.1 1913948..1915756(-) (uvrC) [Riemerella columbina strain TH22]
GTGAATGAGACTTTAGAACTCCAGCTTAAAACGCTACCCTCCGACCCTGGGGTGTACCGCTACTATGATAAAGAAGGGCA
ATTGCTCTATGTAGGTAAGGCTAAAAACTTGAAAAACAGGGTGATGACTTACTTTACTAAAAACCAAGTGGGGTACAAAA
CGCGCATTATGGTGCGAAAAATCCACCGCTTGGAGGTTACCGTAGTGCCGAGTGAATACGATGCTTTGCTATTGGAAAAT
AACCTGATTAAGGAGCACCAGCCGTTCTATAATGTGATGATGAAAGATGACAAATCTTTCCCTTGGCTGTGCATTAAAAA
TGAAGATTTTCCACGGATTTTTTTAACCCGAAAACGCATTAAAGATGGTTCGGAGTATTACGGACCTTACGCCAAGGTGC
GCCCTGCCAGAGTGCTTTTAGAAACTATAAAAGCCCTTTATAAAATCAGGACTTGTAGTCTCAATTTATCACCAGAAAAG
ATAGAGCAATCCAAGTATAAAGTCTGTTTAGAATACCATATCAAAAACTGCGAAGGTCCTTGCGAAGGCTTAGAAACCGA
AGCCGAATACGATAAAAAAATAGAGGCCATCCGTGGGATGATTAAAGGGGATTTCGGTTTAGCCAAACGGCATTTGGAGG
AGGAAATGATGCACTGGGCATCGCTTTTGGAGTTTGAAAAAGCCCAAATGGTTAAGGAAAAATTGGAGATGTTAGAAGAT
TACCAAGTGAAGCACACGGTGGTCAGCCCAACGATTGATGATGTGGATGTTTTCGGGATGTGCAGTGATGAATCTGCGGC
GTACATCAATTATTTTAAAATCAGAAATGGAAATATTGTCCAAAGTTATACCTCAGAATTTCGGAAAAAATTAGACGAAA
CCGACGAGGATATTTTGGAAGAAGCCATCATTGAGATGCGCAATAAATTCCAATCGCGGTCTAAGGAGATTTTGTTGCCG
TTCCATTTGTCTACGGAGATTCCAAAAGTCAAGCTCATTGTGCCTAAGTTGGGCGACAAAAAACGAATTGTAGAACTCTC
CGAAAAGAATGCAAAAGAATACCGTTTAGAAAAGCTCAAACAAATCCAAATTGTAGATCCAGAGCGGCACACCAACCGAA
TAATGGCGGAGATGCAAAAACTCCTGCGGATGCCTGTGGAGCCTCGGTATATAGAGGGTTTTGATAATTCTAACATCCAA
GGGACCAATCCTGTTTCCGCTTGTGTGGTGTTTAAAAATGGGAAGCCGAGTAAGCAAGATTACCGCATTTTTCACATTAA
AACAGTGGAAGGACCGAATGATTTTGCCTCTATGGAGGAGGTCATCTATCGCCGATATAGCCGTTTGCTACAAGAAGGCG
CACCGTTACCACAACTGATTTTAATTGATGGAGGCAAGGGGCAACTCAGCTCTGCGGTTAAGAGTTTAAAGCGTTTAGGG
CTCTACGGCGAAATCACGATTATCGGCATTGCTAAAAGATTGGAAGAACTCTTTTTCCCAGAAGATCCTATTCCATTGTA
TTTGGATAAAACTTCGGAAACGCTAAAAATACTCCAACAAGTGCGAGATGAAGCCCACCGTTTTGGCGTAAAACACCACC
GCACCCGCCGAAAAAATAGCACCATCAAATCCGAGTTGGAAGACATCCCTGGGGTGGGGCCCAAATCTATCGCCTTGCTT
TTACAGAAATTAAAATCTGTGAAACGCATTCGGGAAACCTCTAAAGCTACTTTGGAGGAGATTTTAGGCACGGCAAAGGG
CGCCGCTGTTTGGGCTTATTTCAATAGTGATGAAAGCTCAAAATTTTAA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(379-530)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

36.717

98.173

0.36
  uvrC Streptococcus pneumoniae D39

36.717

98.173

0.36